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Technical University of Munich
Technical University of Munich

Publications

2024

Journal Articles

  • Absmaier-Kijak, Magdalena; Iuliano, Caterina; Kaesler, Susanne; Biedermann, Tilo; Posch, Christian; Brockow, Knut: T-Cell Subtypes and Immune Signatures in Cutaneous Immune-Related Adverse Events in Melanoma Patients under Immune Checkpoint Inhibitor Therapy. Cancers 16 (6), 2024, 1226 more… BibTeX Full text ( DOI )
  • Faihs, Valentina; Schmalhofer, Viktoria; Kugler, Claudia; Bent, Rebekka K.; Scherf, Katharina A.; Lexhaller, Barbara; Mortz, Charlotte G.; Bindslev-Jensen, Carsten; Biedermann, Tilo; Skov, Per S.; Eberlein, Bernadette; Brockow, Knut: Detection of Sensitization Profiles with Cellular In Vitro Tests in Wheat Allergy Dependent on Augmentation Factors (WALDA). International Journal of Molecular Sciences 25 (7), 2024, 3574 more… BibTeX Full text ( DOI )
  • Felchle, Hannah; Gissibl, Julia; Lansink Rotgerink, Laura; Nefzger, Sophie M.; Walther, Caroline N.; Timnik, Vincent R.; Combs, Stephanie E.; Fischer, Julius C.: Influence of intestinal microbial metabolites on the abscopal effect after radiation therapy combined with immune checkpoint inhibitors. Clinical and Translational Radiation Oncology 46, 2024, 100758 more… BibTeX Full text ( DOI )
  • Heppner, Nina; Reitmeier, Sandra; Heddes, Marjolein; Merino, Michael Vig; Schwartz, Leon; Dietrich, Alexander; List, Markus; Gigl, Michael; Meng, Chen; van der Veen, Daan R.; Schirmer, Melanie; Kleigrewe, Karin; Omer, Hélène; Kiessling, Silke; Haller, Dirk: Diurnal rhythmicity of infant fecal microbiota and metabolites: A randomized controlled interventional trial with infant formula. Cell Host & Microbe 32 (4), 2024, 573-587.e5 more… BibTeX Full text ( DOI )
  • Jennings, Susan A.V.; Clavel, Thomas: Synthetic Communities of Gut Microbes for Basic Research and Translational Approaches in Animal Health and Nutrition. Annual Review of Animal Biosciences 12 (1), 2024, 283-300 more… BibTeX Full text ( DOI )
  • Matchado, Monica Steffi; Rühlemann, Malte; Reitmeier, Sandra; Kacprowski, Tim; Frost, Fabian; Haller, Dirk; Baumbach, Jan; List, Markus: On the limits of 16S rRNA gene-based metagenome prediction and functional profiling. Microbial Genomics 10 (2), 2024 more… BibTeX Full text ( DOI )
  • Montero, Juan J.; Trozzo, Riccardo; Sugden, Maya; Öllinger, Rupert; Belka, Alexander; Zhigalova, Ekaterina; Waetzig, Paul; Engleitner, Thomas; Schmidt-Supprian, Marc; Saur, Dieter; Rad, Roland: Genome-scale pan-cancer interrogation of lncRNA dependencies using CasRx. Nature Methods, 2024 more… BibTeX Full text ( DOI )
  • Mostert, Dietrich; Bubeneck, Wilhelm Andrei; Rauh, Theresa; Kielkowski, Pavel; Itzen, Aymelt; Jung, Kirsten; Sieber, Stephan A.: Pronucleotide Probes Reveal a Diverging Specificity for AMPylation vs UMPylation of Human and Bacterial Nucleotide Transferases. Biochemistry 63 (5), 2024, 651-659 more… BibTeX Full text ( DOI )
  • Thiele Orberg, Erik; Meedt, Elisabeth; Hiergeist, Andreas; Xue, Jinling; Heinrich, Paul; Ru, Jinlong; Ghimire, Sakhila; Miltiadous, Oriana; Lindner, Sarah; Tiefgraber, Melanie; Göldel, Sophia; Eismann, Tina; Schwarz, Alix; Göttert, Sascha; Jarosch, Sebastian; Steiger, Katja; Schulz, Christian; Gigl, Michael; Fischer, Julius C.; Janssen, Klaus-Peter; Quante, Michael; Heidegger, Simon; Herhaus, Peter; Verbeek, Mareike; Ruland, Jürgen; van den Brink, Marcel R. M.; Weber, Daniela; Edinger, Matthias; Wolff, Daniel; Busch, Dirk H.; Kleigrewe, Karin; Herr, Wolfgang; Bassermann, Florian; Gessner, André; Deng, Li; Holler, Ernst; Poeck, Hendrik: Bacteria and bacteriophage consortia are associated with protective intestinal metabolites in patients receiving stem cell transplantation. Nature Cancer, 2024 more… BibTeX Full text ( DOI )
  • Toivola, Diana M.; Polari, Lauri; Schwerd, Tobias; Schlegel, Nicolas; Strnad, Pavel: The keratin-desmosome scaffold of internal epithelia in health and disease – The plot is thickening. Current Opinion in Cell Biology 86, 2024, 102282 more… BibTeX Full text ( DOI )
  • Wang, Ying; Hils, Miriam; Fischer, Andrea; Wölbing, Florian; Biedermann, Tilo; Schnieke, Angelika; Fischer, Konrad: Gene-edited pigs: a translational model for human food allergy against alpha-Gal and anaphylaxis. Frontiers in Immunology 15, 2024 more… BibTeX Full text ( DOI )

2023

Journal Articles

  • Amar, Yacine; Rogner, Danielle; Silva, Rafaela L.; Foesel, Bärbel U.; Ud-Dean, Minhaz; Lagkouvardos, Ilias; Steimle-Grauer, Susanne A.; Niedermeier, Sebastian; Kublik, Susanne; Jargosch, Manja; Heinig, Matthias; Thomas, Jenny; Eyerich, Stefanie; Wikström, Jakob; Schloter, Michael; Eyerich, Kilian; Biedermann, Tilo; Köberle, Martin: Darier’s disease exhibits a unique cutaneous microbial dysbiosis associated with inflammation and body malodour. Microbiome 11 (1), 2023 more… BibTeX Full text ( DOI )
  • Bolsega, Silvia; Smoczek, Anna; Meng, Chen; Kleigrewe, Karin; Scheele, Tim; Meller, Sebastian; Glage, Silke; Volk, Holger A.; Bleich, André; Basic, Marijana: The Genetic Background Is Shaping Cecal Enlargement in the Absence of Intestinal Microbiota. Nutrients 15 (3), 2023, 636 more… BibTeX Full text ( DOI )
  • Ducarmon, Quinten R.; Grundler, Franziska; Le Maho, Yvon; Wilhelmi de Toledo, Françoise; Zeller, Georg; Habold, Caroline; Mesnage, Robin: Remodelling of the intestinal ecosystem during caloric restriction and fasting. Trends in Microbiology, 2023 more… BibTeX Full text ( DOI )
  • Falcomatà, Chiara; Bärthel, Stefanie; Schneider, Günter; Rad, Roland; Schmidt-Supprian, Marc; Saur, Dieter: Context-Specific Determinants of the Immunosuppressive Tumor Microenvironment in Pancreatic Cancer. Cancer Discovery 13 (2), 2023, 278-297 more… BibTeX Full text ( DOI )
  • Felchle, Hannah; Brunner, Valentina; Groll, Tanja; Walther, Caroline N.; Nefzger, Sophie M.; Zaurito, Antonio E.; Silva, Miguel G.; Gissibl, Julia; Topping, Geoffrey J.; Lansink Rotgerink, Laura; Saur, Dieter; Steiger, Katja; Combs, Stephanie E.; Tschurtschenthaler, Markus; Fischer, Julius C.: Novel Tumor Organoid-Based Mouse Model to Study Image Guided Radiation Therapy of Rectal Cancer After Noninvasive and Precise Endoscopic Implantation. International Journal of Radiation Oncology*Biology*Physics, 2023 more… BibTeX Full text ( DOI )
  • Fischer, Anja; Lersch, Robert; de Andrade Krätzig, Niklas; Strong, Alexander; Friedrich, Mathias J.; Weber, Julia; Engleitner, Thomas; Öllinger, Rupert; Yen, Hsi-Yu; Kohlhofer, Ursula; Gonzalez-Menendez, Irene; Sailer, David; Kogan, Liz; Lahnalampi, Mari; Laukkanen, Saara; Kaltenbacher, Thorsten; Klement, Christine; Rezaei, Majdaddin; Ammon, Tim; Montero, Juan J.; Schneider, Günter; Mayerle, Julia; Heikenwälder, Mathias; Schmidt-Supprian, Marc; Quintanilla-Martinez, Leticia; Steiger, Katja; Liu, Pentao; Cadiñanos, Juan; Vassiliou, George S.; Saur, Dieter; Lohi, Olli; Heinäniemi, Merja; Conte, Nathalie; Bradley, Allan; Rad, Lena; Rad, Roland: In vivo interrogation of regulatory genomes reveals extensive quasi-insufficiency in cancer evolution. Cell Genomics 3 (3), 2023, 100276 more… BibTeX Full text ( DOI )
  • Gadjalova, Iana; Heinze, Julia M.; Goess, Marie C.; Hofmann, Julian; Buck, Annalisa; Weber, Marie-Christin; Blissenbach, Birgit; Kampick, Maximilian; Krut, Oleg; Steiger, Katja; Janssen, Klaus-Peter; Neumann, Philipp-Alexander; Ruland, Jürgen; Keppler, Selina J.: B cell-mediated CD4 T-cell costimulation via CD86 exacerbates pro-inflammatory cytokine production during autoimmune intestinal inflammation. Mucosal Immunology, 2023 more… BibTeX Full text ( DOI )
  • Griger, Joscha; Widholz, Sebastian A.; Jesinghaus, Moritz; de Andrade Krätzig, Niklas; Lange, Sebastian; Engleitner, Thomas; Montero, Juan José; Zhigalova, Ekaterina; Öllinger, Rupert; Suresh, Veveeyan; Winkler, Wiebke; Lier, Svenja; Baranov, Olga; Trozzo, Riccardo; Ben Khaled, Najib; Chakraborty, Shounak; Yu, Jiakun; Konukiewitz, Björn; Steiger, Katja; Pfarr, Nicole; Rajput, Ashish; Sailer, David; Keller, Gisela; Schirmacher, Peter; Röcken, Christoph; Fagerstedt, Klaus W.; Mayerle, Julia; Schmidt-Supprian, Marc; Schneider, Günter; Weichert, Wilko; Calado, Dinis P.; Sommermann, Thomas; Klöppel, Günter; Rajewsky, Klaus; Saur, Dieter; Rad, Roland: An integrated cellular and molecular model of gastric neuroendocrine cancer evolution highlights therapeutic targets. Cancer Cell 41 (7), 2023, 1327-1344.e10 more… BibTeX Full text ( DOI )
  • Heidegger, Simon; Stritzke, Florian; Dahl, Sarah; Daßler-Plenker, Juliane; Joachim, Laura; Buschmann, Dominik; Fan, Kaiji; Sauer, Carolin M.; Ludwig, Nils; Winter, Christof; Enssle, Stefan; Li, Suqi; Perl, Markus; Görgens, André; Haas, Tobias; Orberg, Erik Thiele; Göttert, Sascha; Wölfel, Catherine; Engleitner, Thomas; Cortés-Ciriano, Isidro; Rad, Roland; Herr, Wolfgang; Giebel, Bernd; Ruland, Jürgen; Bassermann, Florian; Coch, Christoph; Hartmann, Gunther; Poeck, Hendrik: Targeting nucleic acid sensors in tumor cells to reprogram biogenesis and RNA cargo of extracellular vesicles for T cell-mediated cancer immunotherapy. Cell Reports Medicine 4 (9), 2023, 101171 more… BibTeX Full text ( DOI )
  • Heidegger, Simon; Stritzke, Florian; Dahl, Sarah; Daßler-Plenker, Juliane; Joachim, Laura; Buschmann, Dominik; Fan, Kaiji; Sauer, Carolin M.; Ludwig, Nils; Winter, Christof; Enssle, Stefan; Li, Suqi; Perl, Markus; Görgens, André; Haas, Tobias; Orberg, Erik Thiele; Göttert, Sascha; Wölfel, Catherine; Engleitner, Thomas; Cortés-Ciriano, Isidro; Rad, Roland; Herr, Wolfgang; Giebel, Bernd; Ruland, Jürgen; Bassermann, Florian; Coch, Christoph; Hartmann, Gunther; Poeck, Hendrik: Targeting nucleic acid sensors in tumor cells to reprogram biogenesis and RNA cargo of extracellular vesicles for T cell-mediated cancer immunotherapy. Cell Reports Medicine 4 (9), 2023, 101171 more… BibTeX Full text ( DOI )
  • Hiergeist, Andreas; Ruelle, Jean; Emler, Stefan; Gessner, André: Reliability of species detection in 16S microbiome analysis: Comparison of five widely used pipelines and recommendations for a more standardized approach. PLOS ONE 18 (2), 2023, e0280870 more… BibTeX Full text ( DOI )
  • Hils, Miriam; Hoffard, Nils; Iuliano, Caterina; Kreft, Luisa; Chakrapani, Neera; Swiontek, Kyra; Fischer, Konrad; Eberlein, Bernadette; Köberle, Martin; Fischer, Jörg; Hilger, Christiane; Ohnmacht, Caspar; Kaesler, Susanne; Wölbing, Florian; Biedermann, Tilo: IgE and anaphylaxis specific to the carbohydrate alpha-gal depend on IL-4. Journal of Allergy and Clinical Immunology, 2023 more… BibTeX Full text ( DOI )
  • Hoelz, Hannes; Heetmeyer, Jeannine; Tsakmaklis, Anastasia; Hiergeist, Andreas; Siebert, Kolja; De Zen, Federica; Häcker, Deborah; Metwaly, Amira; Neuhaus, Klaus; Gessner, André; Vehreschild, Maria J. G. T.; Haller, Dirk; Schwerd, Tobias: Is Autologous Fecal Microbiota Transfer after Exclusive Enteral Nutrition in Pediatric Crohn’s Disease Patients Rational and Feasible? Data from a Feasibility Test. Nutrients 15 (7), 2023, 1742 more… BibTeX Full text ( DOI )
  • Jarosch, Sebastian; Köhlen, Jan; Ghimire, Sakhila; Orberg, Erik Thiele; Hammel, Monika; Gaag, Doris; Evert, Matthias; Janssen, Klaus-Peter; Hiergeist, Andreas; Gessner, André; Weber, Daniela; Meedt, Elisabeth; Poeck, Hendrik; D’Ippolito, Elvira; Holler, Ernst; Busch, Dirk H.: Multimodal immune cell phenotyping in GI biopsies reveals microbiome-related T cell modulations in human GvHD. Cell Reports Medicine 4 (7), 2023, 101125 more… BibTeX Full text ( DOI )
  • Kehl, Alexandra; Valkai, Mario; Van de Weyer, Anna-Lena; Brockmann, Maria; Steiger, Katja; Schusser, Benjamin; Aupperle-Lellbach, Heike: miRNA Profiles of Canine Intestinal Carcinomas, Lymphomas and Enteritis Analysed by Digital Droplet PCR from FFPE Material. Veterinary Sciences 10 (2), 2023, 125 more… BibTeX Full text ( DOI )
  • Larralde, Martin; Zeller, Georg: PyHMMER: a Python library binding to HMMER for efficient sequence analysis. Bioinformatics 39 (5), 2023 more… BibTeX Full text ( DOI )
  • Lo, Wan-Lin; Kuhlmann, Miriam; Rizzuto, Gabrielle; Ekiz, H. Atakan; Kolawole, Elizabeth M.; Revelo, Monica P.; Andargachew, Rakieb; Li, Zhongmei; Tsai, Yuan-Li; Marson, Alexander; Evavold, Brian D.; Zehn, Dietmar; Weiss, Arthur: A single-amino acid substitution in the adaptor LAT accelerates TCR proofreading kinetics and alters T-cell selection, maintenance and function. Nature Immunology, 2023 more… BibTeX Full text ( DOI )
  • Luo, Shiqi; Ru, Jinlong; Khan Mirzaei, Mohammadali; Xue, Jinling; Peng, Xue; Ralser, Anna; Hadi, Joshua Lemuel; Mejías-Luque, Raquel; Gerhard, Markus; Deng, Li: <i>Helicobacter pylori</i>infection alters gut virome by expanding temperate phages linked to increased risk of colorectal cancer. Gut, 2023, gutjnl-2023-330362 more… BibTeX Full text ( DOI )
  • Luo, Shiqi; Ru, Jinlong; Mirzaei, Mohammadali Khan; Xue, Jinling; Peng, Xue; Ralser, Anna; Luque, Raquel Mejías; Gerhard, Markus; Deng, Li: Gut virome profiling identifies an association between temperate phages and colorectal cancer promoted by <i>Helicobacter pylori</i> infection. Gut Microbes 15 (2), 2023 more… BibTeX Full text ( DOI )
  • Maier, Ann-Marie; Huth, Karsten; Alessandrini, Francesca; Schnautz, Benjamin; Arifovic, Anela; Riols, Fabien; Haid, Mark; Koegler, Anja; Sameith, Katrin; Schmidt-Weber, Carsten B.; Esser-von-Bieren, Julia; Ohnmacht, Caspar: The aryl hydrocarbon receptor regulates lipid mediator production in alveolar macrophages. Frontiers in Immunology 14, 2023 more… BibTeX Full text ( DOI )
  • Metwaly, Amira; Jovic, Jelena; Waldschmitt, Nadine; Khaloian, Sevana; Heimes, Helena; Häcker, Deborah; Ahmed, Mohamed; Hammoudi, Nassim; Le Bourhis, Lionel; Mayorgas, Aida; Siebert, Kolja; Basic, Marijana; Schwerd, Tobias; Allez, Matthieu; Panes, Julian; Salas, Azucena; Bleich, André; Zeissig, Sebastian; Schnupf, Pamela; Cominelli, Fabio; Haller, Dirk: Diet prevents the expansion of segmented filamentous bacteria and ileo-colonic inflammation in a model of Crohn’s disease. Microbiome 11 (1), 2023 more… BibTeX Full text ( DOI )
  • Morrish, Emma; Wartewig, Tim; Kratzert, Andreas; Rosenbaum, Marc; Steiger, Katja; Ruland, Jürgen: The fusion oncogene VAV1‐MYO1F triggers aberrant T‐cell receptor signaling in vivo and drives peripheral T‐cell lymphoma in mice. European Journal of Immunology, 2023, 2250147 more… BibTeX Full text ( DOI )
  • Paul, Mariel C.; Schneeweis, Christian; Falcomatà, Chiara; Shan, Chuan; Rossmeisl, Daniel; Koutsouli, Stella; Klement, Christine; Zukowska, Magdalena; Widholz, Sebastian A.; Jesinghaus, Moritz; Heuermann, Konstanze K.; Engleitner, Thomas; Seidler, Barbara; Sleiman, Katia; Steiger, Katja; Tschurtschenthaler, Markus; Walter, Benjamin; Weidemann, Sören A.; Pietsch, Regina; Schnieke, Angelika; Schmid, Roland M.; Robles, Maria S.; Andrieux, Geoffroy; Boerries, Melanie; Rad, Roland; Schneider, Günter; Saur, Dieter: Non-canonical functions of SNAIL drive context-specific cancer progression. Nature Communications 14 (1), 2023 more… BibTeX Full text ( DOI )
  • Peng, Lei; Guo, Yang; Gerhard, Markus; Gao, Juan-Juan; Liu, Zong-Chao; Mejías-Luque, Raquel; Zhang, Lian; Vieth, Michael; Ma, Jun-Ling; Liu, Wei-Dong; Li, Zhe-Xuan; Zhou, Tong; Li, Wen-Qing; You, Wei-Cheng; Zhang, Yang; Pan, Kai-Feng: Metabolite Alterations and Interactions with Microbiota in Helicobacter pylori-Associated Gastric Lesions. Microbiology Spectrum 11 (4), 2023 more… BibTeX Full text ( DOI )
  • Ralser, Anna; Dietl, Alisa; Jarosch, Sebastian; Engelsberger, Veronika; Wanisch, Andreas; Janssen, Klaus Peter; Middelhoff, Moritz; Vieth, Michael; Quante, Michael; Haller, Dirk; Busch, Dirk H; Deng, Li; Mejías-Luque, Raquel; Gerhard, Markus: <i>Helicobacter pylori</i>promotes colorectal carcinogenesis by deregulating intestinal immunity and inducing a mucus-degrading microbiota signature. Gut 72 (7), 2023, 1258-1270 more… BibTeX Full text ( DOI )
  • Sambruni, Gaia; Macandog, Angeli D.; Wirbel, Jakob; Cagnina, Danilo; Catozzi, Carlotta; Dallavilla, Tiziano; Borgo, Francesca; Fazio, Nicola; Fumagalli-Romario, Uberto; Petz, Wanda L.; Manzo, Teresa; Ravenda, Simona P.; Zeller, Georg; Nezi, Luigi; Schaefer, Martin H.: Location and condition based reconstruction of colon cancer microbiome from human RNA sequencing data. Genome Medicine 15 (1), 2023 more… BibTeX Full text ( DOI )
  • Scherer, Stefanie; Oberle, Susanne G.; Kanev, Kristiyan; Gerullis, Ann-Katrin; Wu, Ming; de Almeida, Gustavo P.; Puleston, Daniel J.; Baixauli, Francesc; Aly, Lilian; Greco, Alessandro; Nizharadze, Tamar; Becker, Nils B.; Hoesslin, Madlaina v.; Donhauser, Lara V.; Berner, Jacqueline; Chu, Talyn; McNamara, Hayley A.; Esencan, Zeynep; Roelli, Patrick; Wurmser, Christine; Kleiter, Ingo; Vehreschild, Maria J. G. T.; Mayer, Christoph A.; Knolle, Percy; Klingenspor, Martin; Fumagalli, Valeria; Iannacone, Matteo; Prlic, Martin; Korn, Thomas; Pearce, Erika L.; Höfer, Thomas; Schulz, Anna M.; Zehn, Dietmar: Pyrimidine de novo synthesis inhibition selectively blocks effector but not memory T cell development. Nature Immunology, 2023 more… BibTeX Full text ( DOI )
  • Schult, David; Maurer, H. Carlo; Frolova, Marina; Ringelhan, Marc; Mayr, Ulrich; Ulrich, Jörg; Heilmaier, Markus; Rasch, Sebastian; Lahmer, Tobias; Reitmeier, Sandra; Hennig, Chiara; Gassner, Christina; Thur, Niklas; Will, Theresa; Janssen, Klaus-Peter; Steiger, Katja; Jesinghaus, Moritz; Neuhaus, Klaus; Quante, Michael; Haller, Dirk; Abdelhafez, Mohamed; Schmid, Roland M.; Middelhoff, Moritz: Systematic Evaluation of Clinical, Nutritional and Fecal Microbial Factors for their Association with Colorectal Polyps. Clinical and Translational Gastroenterology, 2023 more… BibTeX Full text ( DOI )
  • Schumacher, Kilian; Brameyer, Sophie; Jung, Kirsten: Bacterial acid stress response: from cellular changes to antibiotic tolerance and phenotypic heterogeneity. Current Opinion in Microbiology 75, 2023, 102367 more… BibTeX Full text ( DOI )
  • Schumacher, Kilian; Gelhausen, Rick; Kion-Crosby, Willow; Barquist, Lars; Backofen, Rolf; Jung, Kirsten: Ribosome profiling reveals the fine-tuned response of <i>Escherichia coli</i> to mild and severe acid stress. mSystems 8 (6), 2023 more… BibTeX Full text ( DOI )
  • Sket, Tina; Falcomatà, Chiara; Saur, Dieter: Dual Recombinase–Based Mouse Models Help Decipher Cancer Biology and Targets for Therapy. Cancer Research 83 (14), 2023, 2279-2282 more… BibTeX Full text ( DOI )
  • Stein-Thoeringer, Christoph K.; Saini, Neeraj Y.; Zamir, Eli; Blumenberg, Viktoria; Schubert, Maria-Luisa; Mor, Uria; Fante, Matthias A.; Schmidt, Sabine; Hayase, Eiko; Hayase, Tomo; Rohrbach, Roman; Chang, Chia-Chi; McDaniel, Lauren; Flores, Ivonne; Gaiser, Rogier; Edinger, Matthias; Wolff, Daniel; Heidenreich, Martin; Strati, Paolo; Nair, Ranjit; Chihara, Dai; Fayad, Luis E.; Ahmed, Sairah; Iyer, Swaminathan P.; Steiner, Raphael E.; Jain, Preetesh; Nastoupil, Loretta J.; Westin, Jason; Arora, Reetakshi; Wang, Michael L.; Turner, Joel; Menges, Meghan; Hidalgo-Vargas, Melanie; Reid, Kayla; Dreger, Peter; Schmitt, Anita; Müller-Tidow, Carsten; Locke, Frederick L.; Davila, Marco L.; Champlin, Richard E.; Flowers, Christopher R.; Shpall, Elizabeth J.; Poeck, Hendrik; Neelapu, Sattva S.; Schmitt, Michael; Subklewe, Marion; Jain, Michael D.; Jenq, Robert R.; Elinav, Eran: A non-antibiotic-disrupted gut microbiome is associated with clinical responses to CD19-CAR-T cell cancer immunotherapy. Nature Medicine, 2023 more… BibTeX Full text ( DOI )
  • Straub, Adrian; Grassmann, Simon; Jarosch, Sebastian; Richter, Lena; Hilgendorf, Philipp; Hammel, Monika; Wagner, Karolin I.; Buchholz, Veit R.; Schober, Kilian; Busch, Dirk H.: Recruitment of epitope-specific T cell clones with a low-avidity threshold supports efficacy against mutational escape upon re-infection. Immunity 56 (6), 2023, 1269-1284.e6 more… BibTeX Full text ( DOI )
  • Tschurtschenthaler, Markus; Verstockt, Bram: Targeting a Hallmark of Crohn’s Disease: Browning of the Hypertrophic Mesenteric Adipose Tissue as a Novel Strategy to Reduce Inflammation? Journal of Crohn's and Colitis 17 (8), 2023, 1177-1178 more… BibTeX Full text ( DOI )
  • Wartewig, Tim; Daniels, Jay; Schulz, Miriam; Hameister, Erik; Joshi, Abhinav; Park, Joonhee; Morrish, Emma; Venkatasubramani, Anuroop V.; Cernilogar, Filippo M.; van Heijster, Frits H. A.; Hundshammer, Christian; Schneider, Heike; Konstantinidis, Filippos; Gabler, Judith V.; Klement, Christine; Kurniawan, Henry; Law, Calvin; Lee, Yujin; Choi, Sara; Guitart, Joan; Forne, Ignasi; Giustinani, Jérôme; Müschen, Markus; Jain, Salvia; Weinstock, David M.; Rad, Roland; Ortonne, Nicolas; Schilling, Franz; Schotta, Gunnar; Imhof, Axel; Brenner, Dirk; Choi, Jaehyuk; Ruland, Jürgen: PD-1 instructs a tumor-suppressive metabolic program that restricts glycolysis and restrains AP-1 activity in T cell lymphoma. Nature Cancer, 2023 more… BibTeX Full text ( DOI )
  • Winogrodzki, Thomas; Metwaly, Amira; Grodziecki, Alessandro; Liang, Wei; Klinger, Bernhard; Flisikowska, Tatiana; Fischer, Konrad; Flisikowski, Krzysztof; Steiger, Katja; Haller, Dirk; Schnieke, Angelika: <i>TNF</i> <i>ΔARE</i> Pigs: A Translational Crohn’s Disease Model. Journal of Crohn's and Colitis 17 (7), 2023, 1128-1138 more… BibTeX Full text ( DOI )
  • Ye, Huimin; Borusak, Sabrina; Eberl, Claudia; Krasenbrink, Julia; Weiss, Anna S.; Chen, Song-Can; Hanson, Buck T.; Hausmann, Bela; Herbold, Craig W.; Pristner, Manuel; Zwirzitz, Benjamin; Warth, Benedikt; Pjevac, Petra; Schleheck, David; Stecher, Bärbel; Loy, Alexander: Ecophysiology and interactions of a taurine-respiring bacterium in the mouse gut. Nature Communications 14 (1), 2023 more… BibTeX Full text ( DOI )
  • Yin, Yuhan; Sichler, Anna; Ecker, Josef; Laschinger, Melanie; Liebisch, Gerhard; Höring, Marcus; Basic, Marijana; Bleich, André; Zhang, Xue-Jun; Kübelsbeck, Ludwig; Plagge, Johannes; Scherer, Emely; Wohlleber, Dirk; Wang, Jianye; Wang, Yang; Steffani, Marcella; Stupakov, Pavel; Gärtner, Yasmin; Lohöfer, Fabian; Mogler, Carolin; Friess, Helmut; Hartmann, Daniel; Holzmann, Bernhard; Hüser, Norbert; Janssen, Klaus-Peter: Gut microbiota promote liver regeneration through hepatic membrane phospholipid biosynthesis. Journal of Hepatology, 2023 more… BibTeX Full text ( DOI )
  • von Strempel, Alexandra; Weiss, Anna S.; Wittmann, Johannes; Salvado Silva, Marta; Ring, Diana; Wortmann, Esther; Clavel, Thomas; Debarbieux, Laurent; Kleigrewe, Karin; Stecher, Bärbel: Bacteriophages targeting protective commensals impair resistance against Salmonella Typhimurium infection in gnotobiotic mice. PLOS Pathogens 19 (8), 2023, e1011600 more… BibTeX Full text ( DOI )

2022

Journal Articles

  • Afrizal, Afrizal; Jennings, Susan A.V.; Hitch, Thomas C.A.; Riedel, Thomas; Basic, Marijana; Panyot, Atscharah; Treichel, Nicole; Hager, Fabian T.; Wong, Erin Oi-Yan; Wolter, Birger; Viehof, Alina; von Strempel, Alexandra; Eberl, Claudia; Buhl, Eva M.; Abt, Birte; Bleich, André; Tolba, René; Blank, Lars M.; Navarre, William W.; Kiessling, Fabian; Horz, Hans-Peter; Torow, Natalia; Cerovic, Vuk; Stecher, Bärbel; Strowig, Till; Overmann, Jörg; Clavel, Thomas: Enhanced cultured diversity of the mouse gut microbiota enables custom-made synthetic communities. Cell Host &amp; Microbe 30 (11), 2022, 1630-1645.e25 more… BibTeX Full text ( DOI )
  • Aguanno, Doriane; Metwaly, Amira; Coleman, Olivia I.; Haller, Dirk: Modeling microbiota-associated human diseases: from minimal models to complex systems. Microbiome Research Reports 1 (2), 2022, 17 more… BibTeX Full text ( DOI )
  • Alessandrini, Francesca; de Jong, Renske; Wimmer, Maria; Maier, Ann-Marie; Fernandez, Isis; Hils, Miriam; Buters, Jeroen T.; Biedermann, Tilo; Zissler, Ulrich M.; Hoffmann, Christian; Esser-von-Bieren, Julia; Schmidt-Weber, Carsten B.; Ohnmacht, Caspar: Lung Epithelial CYP1 Activity Regulates Aryl Hydrocarbon Receptor Dependent Allergic Airway Inflammation. Frontiers in Immunology 13, 2022 more… BibTeX Full text ( DOI )
  • Altaha, Baraa; Heddes, Marjolein; Pilorz, Violetta; Niu, Yunhui; Gorbunova, Elizaveta; Gigl, Michael; Kleigrewe, Karin; Oster, Henrik; Haller, Dirk; Kiessling, Silke: Genetic and environmental circadian disruption induce weight gain through changes in the gut microbiome. Molecular Metabolism 66, 2022, 101628 more… BibTeX Full text ( DOI )
  • Amar, Y.; Schneider, E.; Köberle, M.; Seeholzer, T.; Musiol, S.; Hölge, I.M.; Gschwendtner, S.; Krappmann, D.; Steiger, K.; Biedermann, T.; Schmidt‐Weber, C.B.; Alessandrini, F.: Microbial dysbiosis in a mouse model of atopic dermatitis mimics shifts in human microbiome and correlates with the key pro‐inflammatory cytokines IL‐4, IL‐33 and TSLP. Journal of the European Academy of Dermatology and Venereology, 2022 more… BibTeX Full text ( DOI )
  • Basic, Marijana; Dardevet, Dominique; Abuja, Peter Michael; Bolsega, Silvia; Bornes, Stéphanie; Caesar, Robert; Calabrese, Francesco Maria; Collino, Massimo; De Angelis, Maria; Gérard, Philippe; Gueimonde, Miguel; Leulier, François; Untersmayr, Eva; Van Rymenant, Evelien; De Vos, Paul; Savary-Auzeloux, Isabelle: Approaches to discern if microbiome associations reflect causation in metabolic and immune disorders. Gut Microbes 14 (1), 2022 more… BibTeX Full text ( DOI )
  • Brameyer, Sophie; Schumacher, Kilian; Kuppermann, Sonja; Jung, Kirsten: Division of labor and collective functionality in Escherichia coli under acid stress. Communications Biology 5 (1), 2022 more… BibTeX Full text ( DOI )
  • Braun, Christian J.; Adames, Andrés Carbonell; Saur, Dieter; Rad, Roland: Tutorial: design and execution of CRISPR in vivo screens. Nature Protocols 17 (9), 2022, 1903-1925 more… BibTeX Full text ( DOI )
  • Chakrapani, Neera; Fischer, Jörg; Swiontek, Kyra; Codreanu-Morel, Françoise; Hannachi, Farah; Morisset, Martine; Mugemana, Clément; Bulaev, Dmitry; Blank, Simon; Bindslev-Jensen, Carsten; Biedermann, Tilo; Ollert, Markus; Hilger, Christiane: α-Gal present on both glycolipids and glycoproteins contributes to immune response in meat-allergic patients. Journal of Allergy and Clinical Immunology 150 (2), 2022, 396-405.e11 more… BibTeX Full text ( DOI )
  • Conrad, David; Kehl, Alexandra; Beitzinger, Christoph; Metzler, Thomas; Steiger, Katja; Pfarr, Nicole; Fischer, Konrad; Klopfleisch, Robert; Aupperle-Lellbach, Heike: Molecular Genetic Investigation of Digital Melanoma in Dogs. Veterinary Sciences 9 (2), 2022, 56 more… BibTeX Full text ( DOI )
  • Dawczynski, Christine; Plagge, Johannes; Jahreis, Gerhard; Liebisch, Gerhard; Höring, Marcus; Seeliger, Claudine; Ecker, Josef: Dietary PUFA Preferably Modify Ethanolamine-Containing Glycerophospholipids of the Human Plasma Lipidome. Nutrients 14 (15), 2022, 3055 more… BibTeX Full text ( DOI )
  • Dieckmann, Sebastian; Strohmeyer, Akim; Willershäuser, Monja; Maurer, Stefanie F.; Wurst, Wolfgang; Marschall, Susan; de Angelis, Martin Hrabe; Kühn, Ralf; Worthmann, Anna; Fuh, Marceline M.; Heeren, Joerg; Köhler, Nikolai; Pauling, Josch K.; Klingenspor, Martin: Susceptibility to diet-induced obesity at thermoneutral conditions is independent of UCP1. American Journal of Physiology-Endocrinology and Metabolism 322 (2), 2022, E85-E100 more… BibTeX Full text ( DOI )
  • Dietrich, Alexander; Matchado, Monica Steffi; Zwiebel, Maximilian; Ölke, Benjamin; Lauber, Michael; Lagkouvardos, Ilias; Baumbach, Jan; Haller, Dirk; Brandl, Beate; Skurk, Thomas; Hauner, Hans; Reitmeier, Sandra; List, Markus: Namco: A microbiome explorer. bioRxiv, 2022 more… BibTeX Full text ( DOI )
  • Ecker, Josef; Liebisch, Gerhard; Janssen, Klaus-Peter: Reply. Gastroenterology 162 (2), 2022, 658-659 more… BibTeX Full text ( DOI )
  • Ehrenfeld, Maximilian; Schrade, Anna; Flisikowska, Tatiana; Perl, Markus; Hirsch, Noah-David; Sichler, Anna; Geyer, Laura; Flisikowski, Krzysztof; Wilhelm, Dirk; Schober, Sebastian Johannes; Johannes, Ludger; Schnieke, Angelika; Janssen, Klaus-Peter: Tumor targeting with bacterial Shiga toxin B-subunit in genetic porcine models for colorectal cancer and osteosarcoma. Molecular Cancer Therapeutics, 2022, molcanther.0445.2021 more… BibTeX Full text ( DOI )
  • Falcomatà, Chiara; Bärthel, Stefanie; Widholz, Sebastian A.; Schneeweis, Christian; Montero, Juan José; Toska, Albulena; Mir, Jonas; Kaltenbacher, Thorsten; Heetmeyer, Jeannine; Swietlik, Jonathan J.; Cheng, Jing-Yuan; Teodorescu, Bianca; Reichert, Oliver; Schmitt, Constantin; Grabichler, Kathrin; Coluccio, Andrea; Boniolo, Fabio; Veltkamp, Christian; Zukowska, Magdalena; Vargas, Angelica Arenas; Paik, Woo Hyun; Jesinghaus, Moritz; Steiger, Katja; Maresch, Roman; Öllinger, Rupert; Ammon, Tim; Baranov, Olga; Robles, Maria S.; Rechenberger, Julia; Kuster, Bernhard; Meissner, Felix; Reichert, Maximilian; Flossdorf, Michael; Rad, Roland; Schmidt-Supprian, Marc; Schneider, Günter; Saur, Dieter: Selective multi-kinase inhibition sensitizes mesenchymal pancreatic cancer to immune checkpoint blockade by remodeling the tumor microenvironment. Nature Cancer, 2022 more… BibTeX Full text ( DOI )
  • Flisikowski, Krzysztof; Perleberg, Carolin; Niu, Guanglin; Winogrodzki, Thomas; Bak, Agnieszka; Liang, Wei; Grodziecki, Alessandro; Zhang, Yue; Pausch, Hubert; Flisikowska, Tatiana; Klinger, Bernhard; Perkowska, Anna; Kind, Alexander; Switonski, Marek; Janssen, Klaus-Peter; Saur, Dieter; Schnieke, Angelika: Wild-type APC Influences the Severity of Familial Adenomatous Polyposis. Cellular and Molecular Gastroenterology and Hepatology 13 (2), 2022, 669-671.e3 more… BibTeX Full text ( DOI )
  • Geissler, Marc Marius; Zeissig, Sebastian: Exploring vast microbial epitope spaces. Immunity 55 (10), 2022, 1758-1760 more… BibTeX Full text ( DOI )
  • Ghazavi, Farzaneh; Huysentruyt, Jelle; De Coninck, Jordy; Kourula, Stephanie; Martens, Sofie; Hassannia, Behrouz; Wartewig, Tim; Divert, Tatyana; Roelandt, Ria; Popper, Bastian; Hiergeist, Andreas; Tougaard, Peter; Vanden Berghe, Tom; Joossens, Marie; Berx, Geert; Takahashi, Nozomi; Wahida, Adam; Vandenabeele, Peter: Executioner caspases 3 and 7 are dispensable for intestinal epithelium turnover and homeostasis at steady state. Proceedings of the National Academy of Sciences 119 (6), 2022, e2024508119 more… BibTeX Full text ( DOI )
  • Ghimire, Sakhila; Ederer, Katharina U.; Meedt, Elisabeth; Weber, Daniela; Matos, Carina; Hiergeist, Andreas; Zeman, Florian; Wolff, Daniel; Edinger, Matthias; Poeck, Hendrik; Herr, Wolfgang; Gessner, André; Holler, Ernst; Bülow, Sigrid: Low Intestinal IL22 Associates With Increased Transplant-Related Mortality After Allogeneic Stem Cell Transplantation. Frontiers in Immunology 13, 2022 more… BibTeX Full text ( DOI )
  • Groll, Tanja; Silva, Miguel; Sarker, Rim Sabrina Jahan; Tschurtschenthaler, Markus; Schnalzger, Theresa; Mogler, Carolin; Denk, Daniela; Schölch, Sebastian; Schraml, Barbara U.; Ruland, Jürgen; Rad, Roland; Saur, Dieter; Weichert, Wilko; Jesinghaus, Moritz; Matiasek, Kaspar; Steiger, Katja: Comparative Study of the Role of Interepithelial Mucosal Mast Cells in the Context of Intestinal Adenoma-Carcinoma Progression. Cancers 14 (9), 2022, 2248 more… BibTeX Full text ( DOI )
  • Haange, Sven-Bastiaan; Till, Andreas; Bergh, Per-Olof; Fauler, Günter; Gigl, Michael; Löfgren-Sandblom, Anita; Schaap, Frank G.; Clavel, Thomas; Trautwein, Christian; Fenske, Wiebke; Kleigrewe, Karin; Marschall, Hanns-Ulrich; Olde Damink, Steven W. M.; Moustafa, Tarek; von Bergen, Martin; Rolle-Kampczyk, Ulrike: Ring Trial on Quantitative Assessment of Bile Acids Reveals a Method- and Analyte-Specific Accuracy and Reproducibility. Metabolites 12 (7), 2022, 583 more… BibTeX Full text ( DOI )
  • Hall, Lindsay J; Schirmer, Melanie: Editorial overview: current state and future of the microbiome field: why context matters. Current Opinion in Microbiology 70, 2022, 102200 more… BibTeX Full text ( DOI )
  • Heddes, Marjolein; Altaha, Baraa; Niu, Yunhui; Reitmeier, Sandra; Kleigrewe, Karin; Haller, Dirk; Kiessling, Silke: The intestinal clock drives the microbiome to maintain gastrointestinal homeostasis. Nature Communications 13 (1), 2022 more… BibTeX Full text ( DOI )
  • Hitch, Thomas C.A.; Bisdorf, Kevin; Afrizal, Afrizal; Riedel, Thomas; Overmann, Jörg; Strowig, Till; Clavel, Thomas: A taxonomic note on the genus Prevotella: Description of four novel genera and emended description of the genera Hallella and Xylanibacter. Systematic and Applied Microbiology 45 (6), 2022, 126354 more… BibTeX Full text ( DOI )
  • Hövelmeyer, Nadine; Schmidt-Supprian, Marc; Ohnmacht, Caspar: NF-κB in control of regulatory T cell development, identity, and function. Journal of Molecular Medicine 100 (7), 2022, 985-995 more… BibTeX Full text ( DOI )
  • Iuliano, Caterina; Absmaier-Kijak, Magdalena; Sinnberg, Tobias; Hoffard, Nils; Hils, Miriam; Köberle, Martin; Wölbing, Florian; Shumilina, Ekaterina; Heise, Nicole; Fehrenbacher, Birgit; Schaller, Martin; Lang, Florian; Kaesler, Susanne; Biedermann, Tilo: Fetal Tissue-Derived Mast Cells (MC) as Experimental Surrogate for In Vivo Connective Tissue MC. Cells 11 (6), 2022, 928 more… BibTeX Full text ( DOI )
  • Jarosch, Sebastian; Köhlen, Jan; Wagner, Sabrina; D’Ippolito, Elvira; Busch, Dirk H.: ChipCytometry for multiplexed detection of protein and mRNA markers on human FFPE tissue samples. STAR Protocols 3 (2), 2022, 101374 more… BibTeX Full text ( DOI )
  • Kaltenbacher, Thorsten; Löprich, Jessica; Maresch, Roman; Weber, Julia; Müller, Sebastian; Oellinger, Rupert; Groß, Nina; Griger, Joscha; de Andrade Krätzig, Niklas; Avramopoulos, Petros; Ramanujam, Deepak; Brummer, Sabine; Widholz, Sebastian A.; Bärthel, Stefanie; Falcomatà, Chiara; Pfaus, Anja; Alnatsha, Ahmed; Mayerle, Julia; Schmidt-Supprian, Marc; Reichert, Maximilian; Schneider, Günter; Ehmer, Ursula; Braun, Christian J.; Saur, Dieter; Engelhardt, Stefan; Rad, Roland: CRISPR somatic genome engineering and cancer modeling in the mouse pancreas and liver. Nature Protocols 17 (4), 2022, 1142-1188 more… BibTeX Full text ( DOI )
  • Kerle, Irina A.; Jägerhuber, Ludwig; Secci, Ramona; Pfarr, Nicole; Blüm, Philipp; Roesch, Romina; Götze, Katharina S.; Weichert, Wilko; Bassermann, Florian; Ruland, Jürgen; Winter, Christof: Circulating Tumor DNA Profiling of a Diffuse Large B Cell Lymphoma Patient with Secondary Acute Myeloid Leukemia. Cancers 14 (6), 2022, 1371 more… BibTeX Full text ( DOI )
  • Koch, Maximilian R.A.; Gong, Ruolan; Friedrich, Verena; Engelsberger, Veronika; Kretschmer, Lorenz; Wanisch, Andreas; Jarosch, Sebastian; Ralser, Anna; Lugen, Bob; Quante, Michael; Vieth, Michael; Vasapolli, Riccardo; Schulz, Christian; Buchholz, Veit R.; Busch, Dirk H.; Mejías-Luque, Raquel; Gerhard, Markus: CagA-specific Gastric CD8+ Tissue-Resident T Cells Control Helicobacter pylori During the Early Infection Phase. Gastroenterology, 2022 more… BibTeX Full text ( DOI )
  • Kreft, Luisa; Schepers, Aloys; Hils, Miriam; Swiontek, Kyra; Flatley, Andrew; Janowski, Robert; Mirzaei, Mohammadali Khan; Dittmar, Michael; Chakrapani, Neera; Desai, Mahesh S.; Eyerich, Stefanie; Deng, Li; Niessing, Dierk; Fischer, Konrad; Feederle, Regina; Blank, Simon; Schmidt-Weber, Carsten B.; Hilger, Christiane; Biedermann, Tilo; Ohnmacht, Caspar: A novel monoclonal IgG1 antibody specific for Galactose-alpha-1,3-galactose questions alpha-Gal epitope expression by bacteria. Frontiers in Immunology 13, 2022 more… BibTeX Full text ( DOI )
  • Li, Xue; Pan, Kaifeng; Vieth, Michael; Gerhard, Markus; Li, Wenqing; Mejiías-Luque, Raquel: JAK-STAT1 Signaling Pathway Is an Early Response to Helicobacter pylori Infection and Contributes to Immune Escape and Gastric Carcinogenesis. International Journal of Molecular Sciences 23 (8), 2022, 4147 more… BibTeX Full text ( DOI )
  • Matos, Carina; Mamilos, Andreas; Shah, Pranali N.; Meedt, Elisabeth; Weber, Daniela; Ghimire, Saroj; Hiergeist, Andreas; Gessner, André; Dickinson, Anne; Dressel, Ralf; Walter, Lutz; Stark, Klaus; Heid, Iris M.; Poeck, Hendrik; Edinger, Matthias; Wolff, Daniel; Herr, Wolfgang; Holler, Ernst; Kreutz, Marina; Ghimire, Sakhila: Downregulation of the vitamin D receptor expression during acute gastrointestinal graft versus host disease is associated with poor outcome after allogeneic stem cell transplantation. Frontiers in Immunology 13, 2022 more… BibTeX Full text ( DOI )
  • Metwaly, Amira; Reitmeier, Sandra; Haller, Dirk: Microbiome risk profiles as biomarkers for inflammatory and metabolic disorders. Nature Reviews Gastroenterology & Hepatology, 2022 more… BibTeX Full text ( DOI )
  • Moosmann, Carolin; Müller, Thomas R.; Busch, Dirk H.; Schober, Kilian: Orthotopic T-cell receptor replacement in primary human T cells using CRISPR-Cas9-mediated homology-directed repair. STAR Protocols 3 (1), 2022, 101031 more… BibTeX Full text ( DOI )
  • Paoli, Lucas; Ruscheweyh, Hans-Joachim; Forneris, Clarissa C.; Hubrich, Florian; Kautsar, Satria; Bhushan, Agneya; Lotti, Alessandro; Clayssen, Quentin; Salazar, Guillem; Milanese, Alessio; Carlström, Charlotte I.; Papadopoulou, Chrysa; Gehrig, Daniel; Karasikov, Mikhail; Mustafa, Harun; Larralde, Martin; Carroll, Laura M.; Sánchez, Pablo; Zayed, Ahmed A.; Cronin, Dylan R.; Acinas, Silvia G.; Bork, Peer; Bowler, Chris; Delmont, Tom O.; Gasol, Josep M.; Gossert, Alvar D.; Kahles, André; Sullivan, Matthew B.; Wincker, Patrick; Zeller, Georg; Robinson, Serina L.; Piel, Jörn; Sunagawa, Shinichi: Biosynthetic potential of the global ocean microbiome. Nature 607 (7917), 2022, 111-118 more… BibTeX Full text ( DOI )
  • Pasztoi, Maria; Ohnmacht, Caspar: Tissue Niches Formed by Intestinal Mesenchymal Stromal Cells in Mucosal Homeostasis and Immunity. International Journal of Molecular Sciences 23 (9), 2022, 5181 more… BibTeX Full text ( DOI )
  • Paulini, Stephanie; Fabiani, Florian D.; Weiss, Anna S.; Moldoveanu, Ana Laura; Helaine, Sophie; Stecher, Bärbel; Jung, Kirsten: The Biological Significance of Pyruvate Sensing and Uptake in Salmonella enterica Serovar Typhimurium. Microorganisms 10 (9), 2022, 1751 more… BibTeX Full text ( DOI )
  • Paulini, Stephanie; Fabiani, Florian D.; Weiss, Anna S.; Moldoveanu, Ana Laura; Helaine, Sophie; Stecher, Bärbel; Jung, Kirsten: The Biological Significance of Pyruvate Sensing and Uptake in Salmonella enterica Serovar Typhimurium. Microorganisms 10 (9), 2022, 1751 more… BibTeX Full text ( DOI )
  • Peuker, Kenneth; Strigli, Anne; Tauriello, Daniele V.F.; Hendricks, Alexander; von Schönfels, Witigo; Burmeister, Greta; Brosch, Mario; Herrmann, Alexander; Krüger, Sandra; Nitsche, Jessica; Južnić, Lea; Geissler, Marc Marius; Hiergeist, Andreas; Gessner, André; Wirbel, Jakob; Ponnudurai, Ruby Priyadarshini; Tunger, Antje; Wehner, Rebekka; Stange, Daniel E.; Weitz, Jürgen; Aust, Daniela E.; Baretton, Gustavo B.; Schmitz, Marc; Röcken, Christoph; Hampe, Jochen; Hinz, Sebastian; Zeller, Georg; Chavakis, Triantafyllos; Schafmayer, Clemens; Batlle, Eduard; Zeissig, Sebastian: Microbiota-dependent activation of the myeloid calcineurin-NFAT pathway inhibits B7H3- and B7H4-dependent anti-tumor immunity in colorectal cancer. Immunity 55 (4), 2022, 701-717.e7 more… BibTeX Full text ( DOI )
  • Purcarea, Anna; Jarosch, Sebastian; Barton, Jack; Grassmann, Simon; Pachmayr, Ludwig; D’Ippolito, Elvira; Hammel, Monika; Hochholzer, Anna; Wagner, Karolin I.; van den Berg, Joost H.; Buchholz, Veit R.; Haanen, John B. A. G.; Busch, Dirk H.; Schober, Kilian: Signatures of recent activation identify a circulating T cell compartment containing tumor-specific antigen receptors with high avidity. Science Immunology 7 (74), 2022 more… BibTeX Full text ( DOI )
  • Radani, Nikole; Metwaly, Amira; Reitmeier, Sandra; Baumeister, Theresa; Ingermann, Jonas; Horstmann, Julia; Anand, Akanksha; Gatz, Ingrid; Kohlmayer, Florian; Janssen, Klaus-Peter; Slotta-Huspenina, Julia; Schmid, Roland M.; Haller, Dirk; Abrams, Julian A.; Quante, Michael: Analysis of fecal, salivary and tissue microbiome in Barrett Esophagus, Dysplasia and Esophageal Adenocarcinoma. Gastro Hep Advances, 2022 more… BibTeX Full text ( DOI )
  • Rath, Eva; Haller, Dirk: Intestinal epithelial cell metabolism at the interface of microbial dysbiosis and tissue injury. Mucosal Immunology 15 (4), 2022, 595-604 more… BibTeX Full text ( DOI )
  • Schult, David; Reitmeier, Sandra; Koyumdzhieva, Plamena; Lahmer, Tobias; Middelhof, Moritz; Erber, Johanna; Schneider, Jochen; Kager, Juliane; Frolova, Marina; Horstmann, Julia; Fricke, Lisa; Steiger, Katja; Jesinghaus, Moritz; Janssen, Klaus-Peter; Protzer, Ulrike; Neuhaus, Klaus; Schmid, Roland M.; Haller, Dirk; Quante, Michael: Gut bacterial dysbiosis and instability is associated with the onset of complications and mortality in COVID-19. Gut Microbes 14 (1), 2022 more… BibTeX Full text ( DOI )
  • Schulz, Anna M; Zehn, Dietmar: Mastering an exhausting marathon: how CD8 + T cells fine‐tune metabolic fitness. Immunology & Cell Biology, 2022 more… BibTeX Full text ( DOI )
  • Schwärzler, Julian; Mayr, Lisa; Vich Vila, Arnau; Grabherr, Felix; Niederreiter, Lukas; Philipp, Maureen; Grander, Christoph; Meyer, Moritz; Jukic, Almina; Tröger, Simone; Enrich, Barbara; Przysiecki, Nicole; Tschurtschenthaler, Markus; Sommer, Felix; Kronberger, Irmgard; Koch, Jakob; Hilbe, Richard; Hess, Michael W.; Oberhuber, Georg; Sprung, Susanne; Ran, Qitao; Koch, Robert; Effenberger, Maria; Kaneider, Nicole C.; Wieser, Verena; Keller, Markus A.; Weersma, Rinse K.; Aden, Konrad; Rosenstiel, Philip; Blumberg, Richard S.; Kaser, Arthur; Tilg, Herbert; Adolph, Timon E.: PUFA-Induced Metabolic Enteritis as a Fuel for Crohn’s Disease. Gastroenterology 162 (6), 2022, 1690-1704 more… BibTeX Full text ( DOI )
  • Stumptner, Conny; Stadlbauer, Vanessa; O’Neil, Dominic; Gessner, André; Hiergeist, Andreas; Zatloukal, Kurt; Abuja, Peter M.: The Pre-Analytical CEN/TS Standard for Microbiome Diagnostics—How Can Research and Development Benefit? Nutrients 14 (9), 2022, 1976 more… BibTeX Full text ( DOI )
  • Tulessin, Margaret; Sarker, Rim Sabrina Jahan; Griger, Joscha; Leibing, Thomas; Geraud, Cyrill; Weichert, Wilko; Steiger, Katja; Mogler, Carolin: Vascular Remodeling Is a Crucial Event in the Early Phase of Hepatocarcinogenesis in Rodent Models for Liver Tumorigenesis. Cells 11 (14), 2022, 2129 more… BibTeX Full text ( DOI )
  • Weigert Muñoz, Angela; Hoyer, Elisabeth; Schumacher, Kilian; Grognot, Marianne; Taute, Katja M.; Hacker, Stephan M.; Sieber, Stephan A.; Jung, Kirsten: Eukaryotic catecholamine hormones influence the chemotactic control of <i>Vibrio campbellii</i> by binding to the coupling protein CheW. Proceedings of the National Academy of Sciences 119 (10), 2022 more… BibTeX Full text ( DOI )
  • Welz, Lina; Kakavand, Nassim; Hang, Xiang; Laue, Georg; Ito, Go; Silva, Miguel Gomes; Plattner, Christina; Mishra, Neha; Tengen, Felicitas; Ogris, Christoph; Jesinghaus, Moritz; Wottawa, Felix; Arnold, Philipp; Kaikkonen, Leena; Stengel, Stefanie; Tran, Florian; Das, Saumya; Kaser, Arthur; Trajanoski, Zlatko; Blumberg, Richard; Roecken, Christoph; Saur, Dieter; Tschurtschenthaler, Markus; Schreiber, Stefan; Rosenstiel, Philip; Aden, Konrad: Epithelial X-Box Binding Protein 1 Coordinates Tumor Protein p53-Driven DNA Damage Responses and Suppression of Intestinal Carcinogenesis. Gastroenterology 162 (1), 2022, 223-237.e11 more… BibTeX Full text ( DOI )
  • Wit, Magdalena; Trujillo‐Viera, Jonathan; Strohmeyer, Akim; Klingenspor, Martin; Hankir, Mohammed; Sumara, Grzegorz: When fat meets the gut—focus on intestinal lipid handling in metabolic health and disease. EMBO Molecular Medicine, 2022 more… BibTeX Full text ( DOI )
  • Würstle, Silvia; Stender, Jana; Hammerl, Jens André; Vogele, Kilian; Rothe, Kathrin; Willy, Christian; Bugert, Joachim Jakob: Practical Assessment of an Interdisciplinary Bacteriophage Delivery Pipeline for Personalized Therapy of Gram-Negative Bacterial Infections. Pharmaceuticals 15 (2), 2022, 186 more… BibTeX Full text ( DOI )
  • Zaurito, Antonio Enrico; Tschurtschenthaler, Markus: Microenvironmental Metabolites in the Intestine: Messengers between Health and Disease. Metabolites 12 (1), 2022, 46 more… BibTeX Full text ( DOI )
  • de Castilhos, Juliana; Zamir, Eli; Hippchen, Theresa; Rohrbach, Roman; Schmidt, Sabine; Hengler, Silvana; Schumacher, Hanna; Neubauer, Melanie; Kunz, Sabrina; Müller-Esch, Tonia; Hiergeist, Andreas; Gessner, André; Khalid, Dina; Gaiser, Rogier; Cullin, Nyssa; Papagiannarou, Stamatia M; Beuthien-Baumann, Bettina; Krämer, Alwin; Bartenschlager, Ralf; Jäger, Dirk; Müller, Michael; Herth, Felix; Duerschmied, Daniel; Schneider, Jochen; Schmid, Roland M; Eberhardt, Johann F; Khodamoradi, Yascha; Vehreschild, Maria J G T; Teufel, Andreas; Ebert, Matthias P; Hau, Peter; Salzberger, Bernd; Schnitzler, Paul; Poeck, Hendrik; Elinav, Eran; Merle, Uta; Stein-Thoeringer, Christoph K: Correction to: Severe Dysbiosis and Specific <i>Haemophilus</i> and <i>Neisseria</i> Signatures as Hallmarks of the Oropharyngeal Microbiome in Critically Ill Coronavirus Disease 2019 (COVID-19) Patients. Clinical Infectious Diseases 75 (1), 2022, 185-185 more… BibTeX Full text ( DOI )
  • von Hoesslin, Madlaina; Kuhlmann, Miriam; de Almeida, Gustavo Pereira; Kanev, Kristiyan; Wurmser, Christine; Gerullis, Ann-Katrin; Roelli, Patrick; Berner, Jacqueline; Zehn, Dietmar: Secondary infections rejuvenate the intestinal CD103 <sup>+</sup> tissue-resident memory T cell pool. Science Immunology 7 (77), 2022 more… BibTeX Full text ( DOI )

2021

Journal Articles

  • Abellan-Schneyder, Isabel; Matchado, Monica S.; Reitmeier, Sandra; Sommer, Alina; Sewald, Zeno; Baumbach, Jan; List, Markus; Neuhaus, Klaus: Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing. mSphere 6 (1), 2021 more… BibTeX Full text ( DOI )
  • Amar, Yacine; Lagkouvardos, Ilias; Silva, Rafaela L.; Ishola, Oluwaseun Ayodeji; Foesel, Bärbel U.; Kublik, Susanne; Schöler, Anne; Niedermeier, Sebastian; Bleuel, Rachela; Zink, Alexander; Neuhaus, Klaus; Schloter, Michael; Biedermann, Tilo; Köberle, Martin: Pre-digest of unprotected DNA by Benzonase improves the representation of living skin bacteria and efficiently depletes host DNA. Microbiome 9 (1), 2021 more… BibTeX Full text ( DOI )
  • Barz, Melanie; Aftahy, Kaywan; Janssen, Insa; Ryang, Yu-Mi; Prokop, Georg; Combs, Stephanie E.; Jost, Philipp J.; Meyer, Bernhard; Gempt, Jens: Spinal Manifestation of Malignant Primary (PLB) and Secondary Bone Lymphoma (SLB). Current Oncology 28 (5), 2021, 3891-3899 more… BibTeX Full text ( DOI )
  • Bolsega, Silvia; Bleich, André; Basic, Marijana: Synthetic Microbiomes on the Rise—Application in Deciphering the Role of Microbes in Host Health and Disease. Nutrients 13 (11), 2021, 4173 more… BibTeX Full text ( DOI )
  • Brockow, Knut; Mathes, Sonja; Fischer, Jörg; Volc, Sebastian; Darsow, Ulf; Eberlein, Bernadette; Biedermann, Tilo: Experience with polyethylene glycol allergy‐guided risk management for COVID‐19 vaccine anaphylaxis. Allergy, 2021 more… BibTeX Full text ( DOI )
  • Buchheister, Stephanie; Bleich, André: Health Monitoring of Laboratory Rodent Colonies—Talking about (R)evolution. Animals 11 (5), 2021, 1410 more… BibTeX Full text ( DOI )
  • Carlet, Michela; Völse, Kerstin; Vergalli, Jenny; Becker, Martin; Herold, Tobias; Arner, Anja; Senft, Daniela; Jurinovic, Vindi; Liu, Wen-Hsin; Gao, Yuqiao; Dill, Veronika; Fehse, Boris; Baldus, Claudia D.; Bastian, Lorenz; Lenk, Lennart; Schewe, Denis M.; Bagnoli, Johannes W.; Vick, Binje; Schmid, Jan Philipp; Wilhelm, Alexander; Marschalek, Rolf; Jost, Philipp J.; Miething, Cornelius; Riecken, Kristoffer; Schmidt-Supprian, Marc; Binder, Vera; Jeremias, Irmela: In vivo inducible reverse genetics in patients’ tumors to identify individual therapeutic targets. Nature Communications 12 (1), 2021 more… BibTeX Full text ( DOI )
  • Dong, Jie; Yetisen, Ali K.; Zhao, Chen; Dong, Xingchen; Brändle, Franziska; Wang, Qi; Jakobi, Martin; Saur, Dieter; Koch, Alexander W.: Single-Shot High-Throughput Phase Imaging with Multibeam Array Interferometric Microscopy. ACS Photonics 8 (12), 2021, 3536-3547 more… BibTeX Full text ( DOI )
  • Eberl, Claudia; Weiss, Anna S.; Jochum, Lara M.; Durai Raj, Abilash Chakravarthy; Ring, Diana; Hussain, Saib; Herp, Simone; Meng, Chen; Kleigrewe, Karin; Gigl, Michael; Basic, Marijana; Stecher, Bärbel: E. coli enhance colonization resistance against Salmonella Typhimurium by competing for galactitol, a context-dependent limiting carbon source. Cell Host & Microbe, 2021 more… BibTeX Full text ( DOI )
  • Ecker, Josef; Benedetti, Elisa; Kindt, Alida S.D.; Höring, Marcus; Perl, Markus; Machmüller, Andrea Christel; Sichler, Anna; Plagge, Johannes; Wang, Yuting; Zeissig, Sebastian; Shevchenko, Andrej; Burkhardt, Ralph; Krumsiek, Jan; Liebisch, Gerhard; Janssen, Klaus-Peter: The Colorectal Cancer Lipidome: Identification of a Robust Tumor-Specific Lipid Species Signature. Gastroenterology 161 (3), 2021, 910-923.e19 more… BibTeX Full text ( DOI )
  • Eisele, Yannick; Mallea, Patrick M.; Gigic, Biljana; Stephens, W. Zac; Warby, Christy A.; Buhrke, Kate; Lin, Tengda; Boehm, Juergen; Schrotz-King, Petra; Hardikar, Sheetal; Huang, Lyen C.; Pickron, T. Bartley; Scaife, Courtney L.; Viskochil, Richard; Koelsch, Torsten; Peoples, Anita R.; Pletneva, Maria A.; Bronner, Mary; Schneider, Martin; Ulrich, Alexis B.; Swanson, Eric A.; Toriola, Adetunji T.; Shibata, David; Li, Christopher I.; Siegel, Erin M.; Figueiredo, Jane; Janssen, Klaus-Peter; Hauner, Hans; Round, June; Ulrich, Cornelia M.; Holowatyj, Andreana N.; Ose, Jennifer: Fusobacterium nucleatum and Clinicopathologic Features of Colorectal Cancer: Results From the ColoCare Study. Clinical Colorectal Cancer, 2021 more… BibTeX Full text ( DOI )
  • Falcomatà, Chiara; Bärthel, Stefanie; Ulrich, Angelika; Diersch, Sandra; Veltkamp, Christian; Rad, Lena; Boniolo, Fabio; Solar, Myriam; Steiger, Katja; Seidler, Barbara; Zukowska, Magdalena; Madej, Joanna; Wang, Mingsong; Öllinger, Rupert; Maresch, Roman; Barenboim, Maxim; Eser, Stefan; Tschurtschenthaler, Markus; Mehrabi, Arianeb; Roessler, Stephanie; Goeppert, Benjamin; Kind, Alexander; Schnieke, Angelika; Robles, Maria S.; Bradley, Allan; Schmid, Roland M.; Schmidt-Supprian, Marc; Reichert, Maximilian; Weichert, Wilko; Sansom, Owen J.; Morton, Jennifer P.; Rad, Roland; Schneider, Günter; Saur, Dieter: Genetic Screens Identify a Context-Specific PI3K/p27Kip1 Node Driving Extrahepatic Biliary Cancer. Cancer Discovery 11 (12), 2021, 3158-3177 more… BibTeX Full text ( DOI )
  • Fischer, David S.; Ansari, Meshal; Wagner, Karolin I.; Jarosch, Sebastian; Huang, Yiqi; Mayr, Christoph H.; Strunz, Maximilian; Lang, Niklas J.; D’Ippolito, Elvira; Hammel, Monika; Mateyka, Laura; Weber, Simone; Wolff, Lisa S.; Witter, Klaus; Fernandez, Isis E.; Leuschner, Gabriela; Milger, Katrin; Frankenberger, Marion; Nowak, Lorenz; Heinig-Menhard, Katharina; Koch, Ina; Stoleriu, Mircea G.; Hilgendorff, Anne; Behr, Jürgen; Pichlmair, Andreas; Schubert, Benjamin; Theis, Fabian J.; Busch, Dirk H.; Schiller, Herbert B.; Schober, Kilian: Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’. Nature Communications 12 (1), 2021 more… BibTeX Full text ( DOI )
  • Friedrich, Verena; Forné, Ignasi; Matzek, Dana; Ring, Diana; Popper, Bastian; Jochum, Lara; Spriewald, Stefanie; Straub, Tobias; Imhof, Axel; Krug, Anne; Stecher, Bärbel; Brocker, Thomas: Helicobacter hepaticus is required for immune targeting of bacterial heat shock protein 60 and fatal colitis in mice. Gut Microbes 13 (1), 2021, 1882928 more… BibTeX Full text ( DOI )
  • Gabler, Angelika Miriam; Gebhard, Julia; Eberlein, Bernadette; Biedermann, Tilo; Scherf, Katharina Anne; Brockow, Knut: The basophil activation test differentiates between patients with wheat‐dependent exercise‐induced anaphylaxis and control subjects using gluten and isolated gluten protein types. Clinical and Translational Allergy 11 (6), 2021 more… BibTeX Full text ( DOI )
  • Ghimire, Sakhila; Weber, Daniela; Hippe, Katrin; Meedt, Elisabeth; Hoepting, Matthias; Kattner, Anna-Sophia; Hiergeist, Andreas; Gessner, André; Matos, Carina; Ghimire, Saroj; Wolff, Daniel; Edinger, Matthias; Hoffmann, Petra; Poeck, Hendrik; Herr, Wolfgang; Holler, Ernst: GPR Expression in Intestinal Biopsies From SCT Patients Is Upregulated in GvHD and Is Suppressed by Broad-Spectrum Antibiotics. Frontiers in Immunology 12, 2021 more… BibTeX Full text ( DOI )
  • Goettsch, Winfried; Beerenwinkel, Niko; Deng, Li; Dölken, Lars; Dutilh, Bas E.; Erhard, Florian; Kaderali, Lars; von Kleist, Max; Marquet, Roland; Matthijnssens, Jelle; McCallin, Shawna; McMahon, Dino; Rattei, Thomas; Van Rij, Ronald P.; Robertson, David L.; Schwemmle, Martin; Stern-Ginossar, Noam; Marz, Manja: ITN—VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics. Viruses 13 (5), 2021, 766 more… BibTeX Full text ( DOI )
  • Groll, Tanja; Schopf, Franziska; Denk, Daniela; Mogler, Carolin; Schwittlick, Ulrike; Aupperle-Lellbach, Heike; Sarker, Sabrina Rim Jahan; Pfarr, Nicole; Weichert, Wilko; Matiasek, Kaspar; Jesinghaus, Moritz; Steiger, Katja: Bridging the Species Gap: Morphological and Molecular Comparison of Feline and Human Intestinal Carcinomas. Cancers 13 (23), 2021, 5941 more… BibTeX Full text ( DOI )
  • Göing S, Jung K.: Viable but Nonculturable Gastrointestinal Bacteria and Their Resuscitation. Archives of Gastroenterology Research (2), 2021, 55-62 more… BibTeX
  • Göing, Stephanie; Gasperotti, Ana Florencia; Yang, Qian; Defoirdt, Tom; Jung, Kirsten: Insights into a Pyruvate Sensing and Uptake System in Vibrio campbellii and Its Importance for Virulence. Journal of Bacteriology 203 (20), 2021 more… BibTeX Full text ( DOI )
  • Haebe, Sarah; Keay, William; Alig, Stefan; Mohr, Anne‐Wiebe; Martin, Larissa K.; Heide, Michael; Secci, Ramona; Krebs, Stefan; Blum, Helmut; Moosmann, Andreas; Louissaint, Abner, Jr; Weinstock, David M.; Thoene, Silvia; Bergwelt‐Baildon, Michael; Ruland, Jürgen; Bararia, Deepak; Weigert, Oliver: The molecular ontogeny of follicular lymphoma: gene mutations succeeding the BCL2 translocation define common precursor cells. British Journal of Haematology, 2021 more… BibTeX Full text ( DOI )
  • Haller, Dirk: Intestinal microbiota in health and disease – seeding multidisciplinary research in Germany. International Journal of Medical Microbiology, 2021, 151514 more… BibTeX Full text ( DOI )
  • Herp, Simone; Durai Raj, Abilash Chakravarthy; Salvado Silva, Marta; Woelfel, Simon; Stecher, Bärbel: The human symbiont Mucispirillum schaedleri: causality in health and disease. Medical Microbiology and Immunology, 2021 more… BibTeX Full text ( DOI )
  • Hiltensperger, Michael; Beltrán, Eduardo; Kant, Ravi; Tyystjärvi, Sofia; Lepennetier, Gildas; Domínguez Moreno, Helena; Bauer, Isabel J.; Grassmann, Simon; Jarosch, Sebastian; Schober, Kilian; Buchholz, Veit R.; Kenet, Selin; Gasperi, Christiane; Öllinger, Rupert; Rad, Roland; Muschaweckh, Andreas; Sie, Christopher; Aly, Lilian; Knier, Benjamin; Garg, Garima; Afzali, Ali M.; Gerdes, Lisa Ann; Kümpfel, Tania; Franzenburg, Sören; Kawakami, Naoto; Hemmer, Bernhard; Busch, Dirk H.; Misgeld, Thomas; Dornmair, Klaus; Korn, Thomas: Skin and gut imprinted helper T cell subsets exhibit distinct functional phenotypes in central nervous system autoimmunity. Nature Immunology 22 (7), 2021, 880-892 more… BibTeX Full text ( DOI )
  • Hinrichsen, Finn; Hamm, Jacob; Westermann, Magdalena; Schröder, Lena; Shima, Kensuke; Mishra, Neha; Walker, Alesia; Sommer, Nina; Klischies, Kenneth; Prasse, Daniela; Zimmermann, Johannes; Kaiser, Sina; Bordoni, Dora; Fazio, Antonella; Marinos, Georgios; Laue, Georg; Imm, Simon; Tremaroli, Valentina; Basic, Marijana; Häsler, Robert; Schmitz, Ruth A.; Krautwald, Stefan; Wolf, Andrea; Stecher, Bärbel; Schmitt-Kopplin, Philippe; Kaleta, Christoph; Rupp, Jan; Bäckhed, Fredrik; Rosenstiel, Philip; Sommer, Felix: Microbial regulation of hexokinase 2 links mitochondrial metabolism and cell death in colitis. Cell Metabolism 33 (12), 2021, 2355-2366.e8 more… BibTeX Full text ( DOI )
  • Hofmann, Julian; Gadjalova, Iana; Mishra, Ritu; Ruland, Jürgen; Keppler, Selina J.: Efficient Tissue Clearing and Multi-Organ Volumetric Imaging Enable Quantitative Visualization of Sparse Immune Cell Populations During Inflammation. Frontiers in Immunology 11, 2021 more… BibTeX Full text ( DOI )
  • Jarosch, Sebastian; Köhlen, Jan; Sarker, Rim S.J.; Steiger, Katja; Janssen, Klaus-Peter; Christians, Arne; Hennig, Christian; Holler, Ernst; D'Ippolito, Elvira; Busch, Dirk H.: Multiplexed imaging and automated signal quantification in formalin-fixed paraffin-embedded tissues by ChipCytometry. Cell Reports Methods 1 (7), 2021, 100104 more… BibTeX Full text ( DOI )
  • Jesinghaus, Moritz; Schmitt, Maxime; Lang, Corinna; Reiser, Marianne; Scheiter, Alexander; Konukiewitz, Björn; Steiger, Katja; Silva, Miguel; Tschurtschenthaler, Markus; Lange, Sebastian; Foersch, Sebastian; Becker, Karl F.; Saur, Dieter; Friess, Helmut; Halfter, Kathrin; Engel, Jutta; Boxberg, Melanie; Pfarr, Nicole; Wilhelm, Dirk; Weichert, Wilko: Morphology Matters. American Journal of Surgical Pathology Publish Ahead of Print, 2021 more… BibTeX Full text ( DOI )
  • Kanev, Kristiyan; Zehn, Dietmar: Origin and fine-tuning of effector CD8 T cell subpopulations in chronic infection. Current Opinion in Virology 46, 2021, 27-35 more… BibTeX Full text ( DOI )
  • Khan Mirzaei, Mohammadali; Deng, Li: New technologies for developing phage-based tools to manipulate the human microbiome. Trends in Microbiology, 2021 more… BibTeX Full text ( DOI )
  • Khan Mirzaei, Mohammadali; Xue, Jinling; Costa, Rita; Ru, Jinlong; Schulz, Sarah; Taranu, Zofia E.; Deng, Li: Challenges of Studying the Human Virome – Relevant Emerging Technologies. Trends in Microbiology 29 (2), 2021, 171-181 more… BibTeX Full text ( DOI )
  • Konukiewitz, Björn; Kasajima, Atsuko; Schmitt, Maxime; Schwamborn, Kristina; Groll, Tanja; Schicktanz, Felix; Delbridge, Claire; Schütze, Lisa Marie; Wilhelm, Dirk; Lang, Corinna; Lange, Sebastian; Foersch, Sebastian; Jank, Paul; Steiger, Katja; Werder, Alexander von; Denkert, Carsten; Weichert, Wilko; Klöppel, Günter; Jesinghaus, Moritz: Neuroendocrine Differentiation in Conventional Colorectal Adenocarcinomas: Incidental Finding or Prognostic Biomarker? Cancers 13 (20), 2021, 5111 more… BibTeX Full text ( DOI )
  • Konukiewitz, Björn; Schmitt, Maxime; Silva, Miguel; Pohl, Junika; Lang, Corinna; Steiger, Katja; Halfter, Kathrin; Engel, Jutta; Schlitter, Anna Melissa; Boxberg, Melanie; Pfarr, Nicole; Wilhelm, Dirk; Foersch, Sebastian; Tschurtschenthaler, Markus; Weichert, Wilko; Jesinghaus, Moritz: Loss of CDX2 in colorectal cancer is associated with histopathologic subtypes and microsatellite instability but is prognostically inferior to hematoxylin–eosin-based morphologic parameters from the WHO classification. British Journal of Cancer 125 (12), 2021, 1632-1646 more… BibTeX Full text ( DOI )
  • Kumar, Neeraj; Hitch, Thomas C. A.; Haller, Dirk; Lagkouvardos, Ilias; Clavel, Thomas: MiMiC: a bioinformatic approach for generation of synthetic communities from metagenomes. Microbial Biotechnology 14 (4), 2021, 1757-1770 more… BibTeX Full text ( DOI )
  • Laurila, Sanna; Sun, Lihua; Lahesmaa, Minna; Schnabl, Katharina; Laitinen, Kirsi; Klén, Riku; Li, Yongguo; Balaz, Miroslav; Wolfrum, Christian; Steiger, Katja; Niemi, Tarja; Taittonen, Markku; U-Din, Mueez; Välikangas, Tommi; Elo, Laura L.; Eskola, Olli; Kirjavainen, Anna K.; Nummenmaa, Lauri; Virtanen, Kirsi A.; Klingenspor, Martin; Nuutila, Pirjo: Secretin activates brown fat and induces satiation. Nature Metabolism 3 (6), 2021, 798-809 more… BibTeX Full text ( DOI )
  • Lechner, Antonie; Henkel, Fiona D.R.; Hartung, Franziska; Bohnacker, Sina; Alessandrini, Francesca; Gubernatorova, Ekaterina O.; Drutskaya, Marina S.; Angioni, Carlo; Schreiber, Yannick; Haimerl, Pascal; Ge, Yan; Thomas, Dominique; Kabat, Agnieszka M.; Pearce, Edward J.; Ohnmacht, Caspar; Nedospasov, Sergei A.; Murray, Peter J.; Chaker, Adam M.; Schmidt-Weber, Carsten B.; Esser-von Bieren, Julia: Macrophages acquire a TNF-dependent inflammatory memory in allergic asthma. Journal of Allergy and Clinical Immunology, 2021 more… BibTeX Full text ( DOI )
  • Liebisch, Gerhard; Plagge, Johannes; Höring, Marcus; Seeliger, Claudine; Ecker, Josef: The effect of gut microbiota on the intestinal lipidome of mice. International Journal of Medical Microbiology 311 (3), 2021, 151488 more… BibTeX Full text ( DOI )
  • Ma, Tianli; Ru, Jinlong; Xue, Jinling; Schulz, Sarah; Mirzaei, Mohammadali Khan; Janssen, Klaus-Peter; Quante, Michael; Deng, Li: Differences in Gut Virome Related to Barrett Esophagus and Esophageal Adenocarcinoma. Microorganisms 9 (8), 2021, 1701 more… BibTeX Full text ( DOI )
  • Maier, Lisa; Goemans, Camille V.; Wirbel, Jakob; Kuhn, Michael; Eberl, Claudia; Pruteanu, Mihaela; Müller, Patrick; Garcia-Santamarina, Sarela; Cacace, Elisabetta; Zhang, Boyao; Gekeler, Cordula; Banerjee, Tisya; Anderson, Exene Erin; Milanese, Alessio; Löber, Ulrike; Forslund, Sofia K.; Patil, Kiran Raosaheb; Zimmermann, Michael; Stecher, Bärbel; Zeller, Georg; Bork, Peer; Typas, Athanasios: Unravelling the collateral damage of antibiotics on gut bacteria. Nature 599 (7883), 2021, 120-124 more… BibTeX Full text ( DOI )
  • Matchado, Monica Steffi; Lauber, Michael; Reitmeier, Sandra; Kacprowski, Tim; Baumbach, Jan; Haller, Dirk; List, Markus: Network analysis methods for studying microbial communities: A mini review. Computational and Structural Biotechnology Journal 19, 2021, 2687-2698 more… BibTeX Full text ( DOI )
  • Maurice, Nicholas J.; Berner, Jacqueline; Taber, Alexis K.; Zehn, Dietmar; Prlic, Martin: Inflammatory signals are sufficient to elicit TOX expression in mouse and human CD8+ T cells. JCI Insight 6 (13), 2021 more… BibTeX Full text ( DOI )
  • Meedt, Elisabeth; Hiergeist, Andreas; Gessner, André; Dettmer, Katja; Liebisch, Gerhard; Ghimire, Sakhila; Poeck, Hendrik; Edinger, Matthias; Wolff, Daniel; Herr, Wolfgang; Holler, Ernst; Weber, Daniela: Prolonged Suppression of Butyrate-Producing Bacteria Is Associated With Acute Gastrointestinal Graft-vs-Host Disease and Transplantation-Related Mortality After Allogeneic Stem Cell Transplantation. Clinical Infectious Diseases, 2021 more… BibTeX Full text ( DOI )
  • Müller, Thomas R.; Jarosch, Sebastian; Hammel, Monika; Leube, Justin; Grassmann, Simon; Bernard, Bettina; Effenberger, Manuel; Andrä, Immanuel; Chaudhry, M. Zeeshan; Käuferle, Theresa; Malo, Antje; Cicin-Sain, Luka; Steinberger, Peter; Feuchtinger, Tobias; Protzer, Ulrike; Schumann, Kathrin; Neuenhahn, Michael; Schober, Kilian; Busch, Dirk H.: Targeted T cell receptor gene editing provides predictable T cell product function for immunotherapy. Cell Reports Medicine 2 (8), 2021, 100374 more… BibTeX Full text ( DOI )
  • O’Neill, Thomas J.; Seeholzer, Thomas; Gewies, Andreas; Gehring, Torben; Giesert, Florian; Hamp, Isabel; Graß, Carina; Schmidt, Henrik; Kriegsmann, Katharina; Tofaute, Marie J.; Demski, Katrin; Poth, Tanja; Rosenbaum, Marc; Schnalzger, Theresa; Ruland, Jürgen; Göttlicher, Martin; Kriegsmann, Mark; Naumann, Ronald; Heissmeyer, Vigo; Plettenburg, Oliver; Wurst, Wolfgang; Krappmann, Daniel: TRAF6 prevents fatal inflammation by homeostatic suppression of MALT1 protease. Science Immunology 6 (65), 2021 more… BibTeX Full text ( DOI )
  • Papaioannou, Nikos E.; Salei, Natallia; Rambichler, Stephan; Ravi, Kaushikk; Popovic, Jelena; Küntzel, Vanessa; Lehmann, Christian H. K.; Fiancette, Remi; Salvermoser, Johanna; Gajdasik, Dominika W.; Mettler, Ramona; Messerer, Denise; Carrelha, Joana; Ohnmacht, Caspar; Haller, Dirk; Stumm, Ralf; Straub, Tobias; Jacobsen, Sten Eirik W.; Schulz, Christian; Withers, David R.; Schotta, Gunnar; Dudziak, Diana; Schraml, Barbara U.: Environmental signals rather than layered ontogeny imprint the function of type 2 conventional dendritic cells in young and adult mice. Nature Communications 12 (1), 2021 more… BibTeX Full text ( DOI )
  • Park, Joonhee; Daniels, Jay; Wartewig, Tim; Ringbloom, Kimberly G.; Martinez-Escala, Maria Estela; Choi, Sara; Thomas, Jane J.; Doukas, Peter G.; Yang, Jingyi; Snowden, Caroline; Law, Calvin; Lee, Yujin; Lee, Katie; Zhang, Yancong; Conran, Carly; Tegtmeyer, Kyle; Mo, Samuel H.; Pease, David R.; Jothishankar, Balaji; Kwok, Pui-Yan; Abdulla, Farah R.; Pro, Barbara; Louissaint, Abner; Boggon, Titus J.; Sosman, Jeffrey; Guitart, Joan; Rao, Deepak; Ruland, Jürgen; Choi, Jaehyuk: Integrated genomic analyses of cutaneous T-cell lymphomas reveal the molecular bases for disease heterogeneity. Blood 138 (14), 2021, 1225-1236 more… BibTeX Full text ( DOI )
  • Poeck, Hendrik; Wintges, Alexander; Dahl, Sarah; Bassermann, Florian; Haas, Tobias; Heidegger, Simon: Tumor cell‐intrinsic RIG‐I signaling governs synergistic effects of immunogenic cancer therapies and checkpoint inhibitors in mice. European Journal of Immunology 51 (6), 2021, 1531-1534 more… BibTeX Full text ( DOI )
  • Prado Acosta, Mariano; Goyette-Desjardins, Guillaume; Scheffel, Jörg; Dudeck, Anne; Ruland, Jürgen; Lepenies, Bernd: S-Layer From Lactobacillus brevis Modulates Antigen-Presenting Cell Functions via the Mincle-Syk-Card9 Axis. Frontiers in Immunology 12, 2021 more… BibTeX Full text ( DOI )
  • Proaño-Vasco, Andrea; Baumeister, Theresa; Metwaly, Amira; Reitmeier, Sandra; Kleigrewe, Karin; Meng, Chen; Gigl, Michael; Engleitner, Thomas; Öllinger, Rupert; Rad, Roland; Steiger, Katja; Anand, Akanksha; Strangmann, Julia; Thimme, Robert; Schmid, Roland M.; Wang, Timothy C.; Quante, Michael: High-Fructose Diet Alters Intestinal Microbial Profile and Correlates with Early Tumorigenesis in a Mouse Model of Barrett’s Esophagus. Microorganisms 9 (12), 2021, 2432 more… BibTeX Full text ( DOI )
  • Reitmeier, Sandra; Hitch, Thomas C. A.; Treichel, Nicole; Fikas, Nikolaos; Hausmann, Bela; Ramer-Tait, Amanda E.; Neuhaus, Klaus; Berry, David; Haller, Dirk; Lagkouvardos, Ilias; Clavel, Thomas: Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling. ISME Communications 1 (1), 2021 more… BibTeX Full text ( DOI )
  • Rosenbaum, Marc; Schnalzger, Theresa; Engleitner, Thomas; Weiß, Christin; Mishra, Ritu; Mibus, Cora; Mitterer, Theresa; Rad, Roland; Ruland, Jürgen: MALT1 protease function in regulatory T cells induces MYC activity to promote mitochondrial function and cellular expansion. European Journal of Immunology, 2021 more… BibTeX Full text ( DOI )
  • Schmitt, Maxime; Silva, Miguel; Konukiewitz, Björn; Lang, Corinna; Steiger, Katja; Halfter, Kathrin; Engel, Jutta; Jank, Paul; Pfarr, Nicole; Wilhelm, Dirk; Foersch, Sebastian; Denkert, Carsten; Tschurtschenthaler, Markus; Weichert, Wilko; Jesinghaus, Moritz: Loss of SATB2 Occurs More Frequently Than CDX2 Loss in Colorectal Carcinoma and Identifies Particularly Aggressive Cancers in High-Risk Subgroups. Cancers 13 (24), 2021, 6177 more… BibTeX Full text ( DOI )
  • Silva, Miguel; Brunner, Valentina; Tschurtschenthaler, Markus: Microbiota and Colorectal Cancer: From Gut to Bedside. Frontiers in Pharmacology 12, 2021 more… BibTeX Full text ( DOI )
  • Strigli, Anne; Gopalakrishnan, Shreya; Zeissig, Yvonne; Basic, Marijana; Wang, Jun; Schwerd, Tobias; Doms, Shauni; Peuker, Kenneth; Hartwig, Jelka; Harder, Jürgen; Hönscheid, Pia; Arnold, Philipp; Kurth, Thomas; Rost, Fabian; Petersen, Britt-Sabina; Forster, Michael; Franke, Andre; Kelsen, Judith R.; Rohlfs, Meino; Klein, Christoph; Muise, Aleixo M.; Warner, Neil; Nambu, Ryusuke; Mayerle, Julia; Török, Helga-Paula; Linkermann, Andreas; Muders, Michael H.; Baretton, Gustavo B.; Hampe, Jochen; Aust, Daniela E.; Baines, John F.; Bleich, André; Zeissig, Sebastian: Deficiency in X-linked inhibitor of apoptosis protein promotes susceptibility to microbial triggers of intestinal inflammation. Science Immunology 6 (65), 2021 more… BibTeX Full text ( DOI )
  • Trujillo‐Viera, Jonathan; El‐Merahbi, Rabih; Schmidt, Vanessa; Karwen, Till; Loza‐Valdes, Angel; Strohmeyer, Akim; Reuter, Saskia; Noh, Minhee; Wit, Magdalena; Hawro, Izabela; Mocek, Sabine; Fey, Christina; Mayer, Alexander E; Löffler, Mona C; Wilhelmi, Ilka; Metzger, Marco; Ishikawa, Eri; Yamasaki, Sho; Rau, Monika; Geier, Andreas; Hankir, Mohammed; Seyfried, Florian; Klingenspor, Martin; Sumara, Grzegorz: Protein Kinase D2 drives chylomicron‐mediated lipid transport in the intestine and promotes obesity. EMBO Molecular Medicine 13 (5), 2021 more… BibTeX Full text ( DOI )
  • Unterer, Magdalena; Khan Mirzaei, Mohammadali; Deng, Li: Gut Phage Database: phage mining in the cave of wonders. Signal Transduction and Targeted Therapy 6 (1), 2021 more… BibTeX Full text ( DOI )
  • Wahida, Adam; Müller, Madeleine; Hiergeist, Andreas; Popper, Bastian; Steiger, Katja; Branca, Caterina; Tschurtschenthaler, Markus; Engleitner, Thomas; Donakonda, Sainitin; De Coninck, Jordy; Öllinger, Rupert; Pfautsch, Marie K.; Müller, Nicole; Silva, Miguel; Usluer, Sinem; Oberg, Erik Thiele; Böttcher, Jan P.; Pfarr, Nicole; Anton, Martina; Slotta-Huspenina, Julia B.; Nerlich, Andreas G.; Madl, Tobias; Basic, Marijana; Bleich, André; Berx, Geert; Ruland, Jürgen; Knolle, Percy A.; Rad, Roland; Adolph, Timon E.; Vandenabeele, Peter; Kanegane, Hirokazu; Gessner, André; Jost, Philipp J.; Yabal, Monica: XIAP restrains TNF-driven intestinal inflammation and dysbiosis by promoting innate immune responses of Paneth and dendritic cells. Science Immunology 6 (65), 2021 more… BibTeX Full text ( DOI )
  • Weiss, Anna S.; Burrichter, Anna G.; Durai Raj, Abilash Chakravarthy; von Strempel, Alexandra; Meng, Chen; Kleigrewe, Karin; Münch, Philipp C.; Rössler, Luis; Huber, Claudia; Eisenreich, Wolfgang; Jochum, Lara M.; Göing, Stephanie; Jung, Kirsten; Lincetto, Chiara; Hübner, Johannes; Marinos, Georgios; Zimmermann, Johannes; Kaleta, Christoph; Sanchez, Alvaro; Stecher, Bärbel: In vitro interaction network of a synthetic gut bacterial community. The ISME Journal, 2021 more… BibTeX Full text ( DOI )
  • Wirbel, Jakob; Zych, Konrad; Essex, Morgan; Karcher, Nicolai; Kartal, Ece; Salazar, Guillem; Bork, Peer; Sunagawa, Shinichi; Zeller, Georg: Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine learning toolbox. Genome Biology 22 (1), 2021 more… BibTeX Full text ( DOI )
  • Zeitler, Leonie; Fiore, Alessandra; Meyer, Claudia; Russier, Marion; Zanella, Gaia; Suppmann, Sabine; Gargaro, Marco; Sidhu, Sachdev S; Seshagiri, Somasekar; Ohnmacht, Caspar; Köcher, Thomas; Fallarino, Francesca; Linkermann, Andreas; Murray, Peter J: Anti-ferroptotic mechanism of IL4i1-mediated amino acid metabolism. eLife 10, 2021 more… BibTeX Full text ( DOI )
  • de Castilhos, Juliana; Zamir, Eli; Hippchen, Theresa; Rohrbach, Roman; Schmidt, Sabine; Hengler, Silvana; Schumacher, Hanna; Neubauer, Melanie; Kunz, Sabrina; Müller-Esch, Tonia; Hiergeist, Andreas; Gessner, André; Khalid, Dina; Gaiser, Rogier; Cullin, Nyssa; Papagiannarou, Stamatia M; Beuthien-Baumann, Bettina; Krämer, Alwin; Bartenschlager, Ralf; Jäger, Dirk; Müller, Michael; Herth, Felix; Duerschmied, Daniel; Schneider, Jochen; Schmid, Roland M; Eberhardt, Johann F; Khodamoradi, Yascha; Vehreschild, Maria J G T; Teufel, Andreas; Ebert, Matthias P; Hau, Peter; Salzberger, Bernd; Schnitzler, Paul; Poeck, Hendrik; Elinav, Eran; Merle, Uta; Stein-Thoeringer, Christoph K: Severe dysbiosis and specific Haemophilus and Neisseria signatures as hallmarks of the oropharyngeal microbiome in critically ill COVID-19 patients. Clinical Infectious Diseases, 2021 more… BibTeX Full text ( DOI )

2020

Journal Articles

  • Alankus, Begüm; Ecker, Veronika; Vahl, Nathalie; Braun, Martina; Weichert, Wilko; Macher-Göppinger, Stephan; Gehring, Torben; Neumayer, Tanja; Zenz, Thorsten; Buchner, Maike; Ruland, Jürgen: Pathological RANK signaling in B cells drives autoimmunity and chronic lymphocytic leukemia. Journal of Experimental Medicine 218 (2), 2020 more… BibTeX Full text ( DOI )
  • Bien, Tanja; Perl, Markus; Machmüller, Andrea C.; Nitsche, Ulrich; Conrad, Anja; Johannes, Ludger; Müthing, Johannes; Soltwisch, Jens; Janssen, Klaus-Peter; Dreisewerd, Klaus: MALDI-2 Mass Spectrometry and Immunohistochemistry Imaging of Gb3Cer, Gb4Cer, and Further Glycosphingolipids in Human Colorectal Cancer Tissue. Analytical Chemistry 92 (10), 2020, 7096-7105 more… BibTeX Full text ( DOI )
  • Blessmann, Joerg; Hanlodsomphou, Soulaphap; Santisouk, Bounlom; Choumlivong, Khamla; Soukhaphouvong, Somphet; Chanthilat, Phankham; Brockow, Knut; Biedermann, Tilo: Serum IgE against galactose-alpha-1,3-galactose is common in Laotian patients with snakebite envenoming but not the major trigger for early anaphylactic reactions to antivenom. Toxicon: X 7, 2020, 100054 more… BibTeX Full text ( DOI )
  • Brückner, Annecarin; Werkstetter, Katharina Julia; Frivolt, Klara; Shokry, Engy; Ahmed, Mohamed; Metwaly, Amira; Marques, Jair Gonzalez; Uhl, Olaf; Krohn, Kathrin; Hajji, Mohammad; Otte, Sebastian; Pozza, Susanne Bechtold-Dalla; Bufler, Philip; Liptay, Susanne; Haller, Dirk; Koletzko, Berthold; Koletzko, Sibylle; Schwerd, Tobias: Partial enteral nutrition has no benefit on bone health but improves growth in paediatric patients with quiescent or mild Crohn's disease. Clinical Nutrition 39 (12), 2020, 3786-3796 more… BibTeX Full text ( DOI )
  • Cieplik, Fabian; Wiedenhofer, Alma Maria; Pietsch, Verena; Hiller, Karl-Anton; Hiergeist, Andreas; Wagner, Andrea; Baldaranov, Dobri; Linker, Ralf A.; Jantsch, Jonathan; Buchalla, Wolfgang; Schlachetzki, Felix; Gessner, André: Oral Health, Oral Microbiota, and Incidence of Stroke-Associated Pneumonia—A Prospective Observational Study. Frontiers in Neurology 11, 2020 more… BibTeX Full text ( DOI )
  • Eberl, Claudia; Ring, Diana; Münch, Philipp C.; Beutler, Markus; Basic, Marijana; Slack, Emma Caroline; Schwarzer, Martin; Srutkova, Dagmar; Lange, Anna; Frick, Julia S.; Bleich, André; Stecher, Bärbel: Reproducible Colonization of Germ-Free Mice With the Oligo-Mouse-Microbiota in Different Animal Facilities. Frontiers in Microbiology 10, 2020 more… BibTeX Full text ( DOI )
  • Fischer, Jörg; Riel, Simon; Fehrenbacher, Birgit; Frank, Alisa; Schaller, Martin; Biedermann, Tilo; Hilger, Christiane; Mackenstedt, Ute: Spatial distribution of alpha-gal in Ixodes ricinus – A histological study. Ticks and Tick-borne Diseases 11 (5), 2020, 101506 more… BibTeX Full text ( DOI )
  • Flosbach, Markus; Oberle, Susanne G.; Scherer, Stefanie; Zecha, Jana; von Hoesslin, Madlaina; Wiede, Florian; Chennupati, Vijaykumar; Cullen, Jolie G.; List, Markus; Pauling, Josch K.; Baumbach, Jan; Kuster, Bernhard; Tiganis, Tony; Zehn, Dietmar: PTPN2 Deficiency Enhances Programmed T Cell Expansion and Survival Capacity of Activated T Cells. Cell Reports 32 (4), 2020, 107957 more… BibTeX Full text ( DOI )
  • Gasperotti, Ana; Göing, Stephanie; Fajardo-Ruiz, Elena; Forné, Ignasi; Jung, Kirsten: Function and Regulation of the Pyruvate Transporter CstA in Escherichia coli. International Journal of Molecular Sciences 21 (23), 2020, 9068 more… BibTeX Full text ( DOI )
  • Hils, Miriam; Wölbing, Florian; Hilger, Christiane; Fischer, Jörg; Hoffard, Nils; Biedermann, Tilo: The History of Carbohydrates in Type I Allergy. Frontiers in Immunology 11, 2020 more… BibTeX Full text ( DOI )
  • Jochum, Lara; Stecher, Bärbel: Label or Concept – What Is a Pathobiont? Trends in Microbiology 28 (10), 2020, 789-792 more… BibTeX Full text ( DOI )
  • Khaloian, Sevana; Rath, Eva; Hammoudi, Nassim; Gleisinger, Elisabeth; Blutke, Andreas; Giesbertz, Pieter; Berger, Emanuel; Metwaly, Amira; Waldschmitt, Nadine; Allez, Matthieu; Haller, Dirk: Mitochondrial impairment drives intestinal stem cell transition into dysfunctional Paneth cells predicting Crohn’s disease recurrence. Gut 69 (11), 2020, 1939-1951 more… BibTeX Full text ( DOI )
  • Khan Mirzaei, Mohammadali; Deng, Li: Sustainable Microbiome: a symphony orchestrated by synthetic phages. Microbial Biotechnology 14 (1), 2020, 45-50 more… BibTeX Full text ( DOI )
  • Kreft, Luisa; Hoffmann, Christian; Ohnmacht, Caspar: Therapeutic Potential of the Intestinal Microbiota for Immunomodulation of Food Allergies. Frontiers in Immunology 11, 2020 more… BibTeX Full text ( DOI )
  • Lourenço, Marta; Chaffringeon, Lorenzo; Lamy-Besnier, Quentin; Pédron, Thierry; Campagne, Pascal; Eberl, Claudia; Bérard, Marion; Stecher, Bärbel; Debarbieux, Laurent; De Sordi, Luisa: The Spatial Heterogeneity of the Gut Limits Predation and Fosters Coexistence of Bacteria and Bacteriophages. Cell Host & Microbe 28 (3), 2020, 390-401.e5 more… BibTeX Full text ( DOI )
  • Metwaly, Amira; Dunkel, Andreas; Waldschmitt, Nadine; Raj, Abilash Chakravarthy Durai; Lagkouvardos, Ilias; Corraliza, Ana Maria; Mayorgas, Aida; Martinez-Medina, Margarita; Reiter, Sinah; Schloter, Michael; Hofmann, Thomas; Allez, Matthieu; Panes, Julian; Salas, Azucena; Haller, Dirk: Integrated microbiota and metabolite profiles link Crohn’s disease to sulfur metabolism. Nature Communications 11 (1), 2020 more… BibTeX Full text ( DOI )
  • Munkhbaatar, Enkhtsetseg; Dietzen, Michelle; Agrawal, Deepti; Anton, Martina; Jesinghaus, Moritz; Boxberg, Melanie; Pfarr, Nicole; Bidola, Pidassa; Uhrig, Sebastian; Höckendorf, Ulrike; Meinhardt, Anna-Lena; Wahida, Adam; Heid, Irina; Braren, Rickmer; Mishra, Ritu; Warth, Arne; Muley, Thomas; Poh, Patrina S. P.; Wang, Xin; Fröhling, Stefan; Steiger, Katja; Slotta-Huspenina, Julia; van Griensven, Martijn; Pfeiffer, Franz; Lange, Sebastian; Rad, Roland; Spella, Magda; Stathopoulos, Georgios T.; Ruland, Jürgen; Bassermann, Florian; Weichert, Wilko; Strasser, Andreas; Branca, Caterina; Heikenwalder, Mathias; Swanton, Charles; McGranahan, Nicholas; Jost, Philipp J.: MCL-1 gains occur with high frequency in lung adenocarcinoma and can be targeted therapeutically. Nature Communications 11 (1), 2020 more… BibTeX Full text ( DOI )
  • Penack, Olaf; Marchetti, Monia; Ruutu, Tapani; Aljurf, Mahmoud; Bacigalupo, Andrea; Bonifazi, Francesca; Ciceri, Fabio; Cornelissen, Jan; Malladi, Ram; Duarte, Rafael F; Giebel, Sebastian; Greinix, Hildegard; Holler, Ernst; Lawitschka, Anita; Mielke, Stephan; Mohty, Mohamad; Arat, Mutlu; Nagler, Arnon; Passweg, Jakob; Schoemans, Hélène; Socié, Gerard; Solano, Carlos; Vrhovac, Radovan; Zeiser, Robert; Kröger, Nicolaus; Basak, Grzegorz W: Prophylaxis and management of graft versus host disease after stem-cell transplantation for haematological malignancies: updated consensus recommendations of the European Society for Blood and Marrow Transplantation. The Lancet Haematology 7 (2), 2020, e157-e167 more… BibTeX Full text ( DOI )
  • Rauh, Theresa; Brameyer, Sophie; Kielkowski, Pavel; Jung, Kirsten; Sieber, Stephan A.: MS-Based in Situ Proteomics Reveals AMPylation of Host Proteins during Bacterial Infection. ACS Infectious Diseases 6 (12), 2020, 3277-3289 more… BibTeX Full text ( DOI )
  • Reitmeier, Sandra; Kiessling, Silke; Clavel, Thomas; List, Markus; Almeida, Eduardo L.; Ghosh, Tarini S.; Neuhaus, Klaus; Grallert, Harald; Linseisen, Jakob; Skurk, Thomas; Brandl, Beate; Breuninger, Taylor A.; Troll, Martina; Rathmann, Wolfgang; Linkohr, Birgit; Hauner, Hans; Laudes, Matthias; Franke, Andre; Le Roy, Caroline I.; Bell, Jordana T.; Spector, Tim; Baumbach, Jan; O’Toole, Paul W.; Peters, Annette; Haller, Dirk: Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes. Cell Host & Microbe 28 (2), 2020, 258-272.e6 more… BibTeX Full text ( DOI )
  • Reitmeier, Sandra; Kiessling, Silke; Neuhaus, Klaus; Haller, Dirk: Comparing Circadian Rhythmicity in the Human Gut Microbiome. STAR Protocols 1 (3), 2020, 100148 more… BibTeX Full text ( DOI )
  • Schober, Kilian; Fuchs, Pim; Mir, Jonas; Hammel, Monika; Fanchi, Lorenzo; Flossdorf, Michael; Busch, Dirk H.: The CMV-Specific CD8+ T Cell Response Is Dominated by Supra-Public Clonotypes with High Generation Probabilities. Pathogens 9 (8), 2020, 650 more… BibTeX Full text ( DOI )
  • Schober, Kilian; Voit, Florian; Grassmann, Simon; Müller, Thomas R.; Eggert, Joel; Jarosch, Sebastian; Weißbrich, Bianca; Hoffmann, Patrick; Borkner, Lisa; Nio, Enzo; Fanchi, Lorenzo; Clouser, Christopher R.; Radhakrishnan, Aditya; Mihatsch, Lorenz; Lückemeier, Philipp; Leube, Justin; Dössinger, Georg; Klein, Ludger; Neuenhahn, Michael; Oduro, Jennifer D.; Cicin-Sain, Luka; Buchholz, Veit R.; Busch, Dirk H.: Reverse TCR repertoire evolution toward dominant low-affinity clones during chronic CMV infection. Nature Immunology 21 (4), 2020, 434-441 more… BibTeX Full text ( DOI )
  • Silverman, Edwin K.; Schmidt, Harald H. H. W.; Anastasiadou, Eleni; Altucci, Lucia; Angelini, Marco; Badimon, Lina; Balligand, Jean‐Luc; Benincasa, Giuditta; Capasso, Giovambattista; Conte, Federica; Di Costanzo, Antonella; Farina, Lorenzo; Fiscon, Giulia; Gatto, Laurent; Gentili, Michele; Loscalzo, Joseph; Marchese, Cinzia; Napoli, Claudio; Paci, Paola; Petti, Manuela; Quackenbush, John; Tieri, Paolo; Viggiano, Davide; Vilahur, Gemma; Glass, Kimberly; Baumbach, Jan: Molecular networks in Network Medicine: Development and applications. WIREs Systems Biology and Medicine 12 (6), 2020 more… BibTeX Full text ( DOI )
  • Streidl, Theresa; Karkossa, Isabel; Segura Muñoz, Rafael R.; Eberl, Claudia; Zaufel, Alex; Plagge, Johannes; Schmaltz, Robert; Schubert, Kristin; Basic, Marijana; Schneider, Kai Markus; Afify, Mamdouh; Trautwein, Christian; Tolba, René; Stecher, Bärbel; Doden, Heidi L.; Ridlon, Jason M.; Ecker, Josef; Moustafa, Tarek; von Bergen, Martin; Ramer-Tait, Amanda E.; Clavel, Thomas: The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice. Gut Microbes 13 (1), 2020, 1854008 more… BibTeX Full text ( DOI )
  • Wylensek, David; Hitch, Thomas C. A.; Riedel, Thomas; Afrizal, Afrizal; Kumar, Neeraj; Wortmann, Esther; Liu, Tianzhe; Devendran, Saravanan; Lesker, Till R.; Hernández, Sara B.; Heine, Viktoria; Buhl, Eva M.; M. D’Agostino, Paul; Cumbo, Fabio; Fischöder, Thomas; Wyschkon, Marzena; Looft, Torey; Parreira, Valeria R.; Abt, Birte; Doden, Heidi L.; Ly, Lindsey; Alves, João M. P.; Reichlin, Markus; Flisikowski, Krzysztof; Suarez, Laura Navarro; Neumann, Anthony P.; Suen, Garret; de Wouters, Tomas; Rohn, Sascha; Lagkouvardos, Ilias; Allen-Vercoe, Emma; Spröer, Cathrin; Bunk, Boyke; Taverne-Thiele, Anja J.; Giesbers, Marcel; Wells, Jerry M.; Neuhaus, Klaus; Schnieke, Angelika; Cava, Felipe; Segata, Nicola; Elling, Lothar; Strowig, Till; Ridlon, Jason M.; Gulder, Tobias A. M.; Overmann, Jörg; Clavel, Thomas: A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nature Communications 11 (1), 2020 more… BibTeX Full text ( DOI )
  • Yim, Joshua J.; Harmsen, Stefan; Flisikowski, Krzysztof; Flisikowska, Tatiana; Namkoong, Hong; Garland, Megan; van den Berg, Nynke S.; Vilches-Moure, José G.; Schnieke, Angelika; Saur, Dieter; Glasl, Sarah; Gorpas, Dimitris; Habtezion, Aida; Ntziachristos, Vasilis; Contag, Christopher H.; Gambhir, Sanjiv S.; Bogyo, Matthew; Rogalla, Stephan: A protease-activated, near-infrared fluorescent probe for early endoscopic detection of premalignant gastrointestinal lesions. Proceedings of the National Academy of Sciences 118 (1), 2020, e2008072118 more… BibTeX Full text ( DOI )
  • van Best, N.; Rolle-Kampczyk, U.; Schaap, F. G.; Basic, M.; Olde Damink, S. W. M.; Bleich, A.; Savelkoul, P. H. M.; von Bergen, M.; Penders, J.; Hornef, M. W.: Bile acids drive the newborn’s gut microbiota maturation. Nature Communications 11 (1), 2020 more… BibTeX Full text ( DOI )

2019

Journal Articles

  • Falcomatà, Chiara; Bärthel, Stefanie; Schneider, Günter; Saur, Dieter; Veltkamp, Christian: Deciphering the universe of genetic context-dependencies using mouse models of cancer. Current Opinion in Genetics & Development 54, 2019, 97-104 more… BibTeX Full text ( DOI )
  • Fischer, Julius C.; Bscheider, Michael; Göttert, Sascha; Thiele Orberg, Erik; Combs, Stephanie E.; Bassermann, Florian; Heidegger, Simon; Haas, Tobias; Poeck, Hendrik: Type I interferon signaling before hematopoietic stem cell transplantation lowers donor T cell activation via reduced allogenicity of recipient cells. Scientific Reports 9 (1), 2019 more… BibTeX Full text ( DOI )
  • Guo, Yang; Zhang, Yang; Gerhard, Markus; Gao, Juan-Juan; Mejias-Luque, Raquel; Zhang, Lian; Vieth, Michael; Ma, Jun-Ling; Bajbouj, Monther; Suchanek, Stepan; Liu, Wei-Dong; Ulm, Kurt; Quante, Michael; Li, Zhe-Xuan; Zhou, Tong; Schmid, Roland; Classen, Meinhard; Li, Wen-Qing; You, Wei-Cheng; Pan, Kai-Feng: Effect of Helicobacter pylori on gastrointestinal microbiota: a population-based study in Linqu, a high-risk area of gastric cancer. Gut 69 (9), 2019, 1598-1607 more… BibTeX Full text ( DOI )
  • Heidegger, Simon; Kreppel, Diana; Bscheider, Michael; Stritzke, Florian; Nedelko, Tatiana; Wintges, Alexander; Bek, Sarah; Fischer, Julius C.; Graalmann, Theresa; Kalinke, Ulrich; Bassermann, Florian; Haas, Tobias; Poeck, Hendrik: RIG-I activating immunostimulatory RNA boosts the efficacy of anticancer vaccines and synergizes with immune checkpoint blockade. EBioMedicine 41, 2019, 146-155 more… BibTeX Full text ( DOI )
  • Heidegger, Simon; Wintges, Alexander; Stritzke, Florian; Bek, Sarah; Steiger, Katja; Koenig, Paul-Albert; Göttert, Sascha; Engleitner, Thomas; Öllinger, Rupert; Nedelko, Tatiana; Fischer, Julius C.; Makarov, Vladimir; Winter, Christof; Rad, Roland; van den Brink, Marcel R.M.; Ruland, Jürgen; Bassermann, Florian; Chan, Timothy A.; Haas, Tobias; Poeck, Hendrik: RIG-I activation is critical for responsiveness to checkpoint blockade. Science Immunology 4 (39), 2019, eaau8943 more… BibTeX Full text ( DOI )
  • Hilger, Christiane; Fischer, Jörg; Wölbing, Florian; Biedermann, Tilo: Role and Mechanism of Galactose-Alpha-1,3-Galactose in the Elicitation of Delayed Anaphylactic Reactions to Red Meat. Current Allergy and Asthma Reports 19 (1), 2019 more… BibTeX Full text ( DOI )
  • Kaesler, Susanne; Wölbing, Florian; Kempf, Wolfgang Eberhard; Skabytska, Yuliya; Köberle, Martin; Volz, Thomas; Sinnberg, Tobias; Amaral, Teresa; Möckel, Sigrid; Yazdi, Amir; Metzler, Gisela; Schaller, Martin; Hartmann, Karin; Weide, Benjamin; Garbe, Claus; Rammensee, Hans-Georg; Röcken, Martin; Biedermann, Tilo: Targeting tumor-resident mast cells for effective anti-melanoma immune responses. JCI Insight 4 (19), 2019 more… BibTeX Full text ( DOI )
  • Lagkouvardos, Ilias; Lesker, Till R.; Hitch, Thomas C. A.; Gálvez, Eric J. C.; Smit, Nathiana; Neuhaus, Klaus; Wang, Jun; Baines, John F.; Abt, Birte; Stecher, Bärbel; Overmann, Jörg; Strowig, Till; Clavel, Thomas: Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family. Microbiome 7 (1), 2019 more… BibTeX Full text ( DOI )
  • Li, Kai; Neumann, Konstantin; Duhan, Vikas; Namineni, Sukumar; Hansen, Anne Louise; Wartewig, Tim; Kurgyis, Zsuzsanna; Holm, Christian K.; Heikenwalder, Mathias; Lang, Karl S.; Ruland, Jürgen: The uric acid crystal receptor Clec12A potentiates type I interferon responses. Proceedings of the National Academy of Sciences 116 (37), 2019, 18544-18549 more… BibTeX Full text ( DOI )
  • Metzger, Rebecca; Maruskova, Mahulena; Krebs, Sabrina; Janssen, Klaus-Peter; Krug, Anne B.: Increased Incidence of Colon Tumors in AOM-Treated Apc1638N/+ Mice Reveals Higher Frequency of Tumor Associated Neutrophils in Colon Than Small Intestine. Frontiers in Oncology 9, 2019 more… BibTeX Full text ( DOI )
  • Rogalla, Stephan; Flisikowski, Krzysztof; Gorpas, Dimitris; Mayer, Aaron T.; Flisikowska, Tatiana; Mandella, Michael J.; Ma, Xiaopeng; Casey, Kerriann M.; Felt, Stephen A.; Saur, Dieter; Ntziachristos, Vasilis; Schnieke, Angelika; Contag, Christopher H.; Gambhir, Sanjiv S.; Harmsen, Stefan: Biodegradable Fluorescent Nanoparticles for Endoscopic Detection of Colorectal Carcinogenesis. Advanced Functional Materials 29 (51), 2019, 1904992 more… BibTeX Full text ( DOI )
  • Rosenbaum, Marc; Gewies, Andreas; Pechloff, Konstanze; Heuser, Christoph; Engleitner, Thomas; Gehring, Torben; Hartjes, Lara; Krebs, Sabrina; Krappmann, Daniel; Kriegsmann, Mark; Weichert, Wilko; Rad, Roland; Kurts, Christian; Ruland, Jürgen: Bcl10-controlled Malt1 paracaspase activity is key for the immune suppressive function of regulatory T cells. Nature Communications 10 (1), 2019 more… BibTeX Full text ( DOI )
  • Ruland, Jürgen: Colon Cancer: Epithelial Notch Signaling Recruits Neutrophils to Drive Metastasis. Cancer Cell 36 (3), 2019, 213-214 more… BibTeX Full text ( DOI )
  • Schweizer, Sabine; Liebisch, Gerhard; Oeckl, Josef; Hoering, Marcus; Seeliger, Claudine; Schiebel, Carolin; Klingenspor, Martin; Ecker, Josef: The lipidome of primary murine white, brite, and brown adipocytes—Impact of beta-adrenergic stimulation. PLOS Biology 17 (8), 2019, e3000412 more… BibTeX Full text ( DOI )
  • Sie, Christopher; Perez, Laura Garcia; Kreutzfeldt, Mario; Potthast, Maria; Ohnmacht, Caspar; Merkler, Doron; Huber, Samuel; Krug, Anne; Korn, Thomas: Dendritic Cell Accumulation in the Gut and Central Nervous System Is Differentially Dependent on α4 Integrins. The Journal of Immunology 203 (6), 2019, 1417-1427 more… BibTeX Full text ( DOI )

Preprints

1. Afrizal A, Jennings SAV, Hitch TCA, Riedel T, Basic M, Panyot A, Treichel N, Hager FT, Brück R, Wong EO-Y, von Strempel A, Eberl C, Buhl EM, Abt B, Bleich A, Tolba R, Navarre WW, Kiessling F, Horz H-P, Torow N, Cerovic V, Stecher B, Strowig T, Overmann J, Clavel T. Enhanced cultured diversity of the mouse gut microbiota enables custom-made synthetic communities. bioRxiv 2022:2022.03.07.483007.

2. Heddes M, Altaha B, Niu Y, Reitmeier S, Kleigrewe K, Haller D, Kiessling S. The intestinal circadian clock drives microbial rhythmicity to maintain gastrointestinal homeostasis. bioRxiv 2021:2021.10.18.464061.

3. Hövelmeyer N, Schmidt-Supprian M, Ohnmacht C. NF-κB in control of regulatory T cell development, identity, and function. J Mol Med (Berl) 2022;100:985-995.

4. Thiele Orberg E, Meedt E, Hiergeist A, Xue J, Ghimire S, Tiefgraber M, Göldel S, Eismann T, Schwarz A, Jarosch S, Steiger K, Gigl M, Kleigrewe K, Fischer J, Janssen K, Quante M, Heidegger S, Herhaus P, Verbeek M, Poeck H. Identification of Protective, Metabolite-producing Bacterial and Viral Consortia in Allogeneic Stem Cell Transplantation Patients.  2022.

5. Ralser A, Dietl A, Jarosch S, Engelsberger V, Wanisch A, Janssen KP, Vieth M, Quante M, Haller D, Busch DH, Deng L, Mejías-Luque R, Gerhard M. Helicobacter pylori promotes colorectal carcinogenesis by deregulating intestinal immunity and inducing a mucus-degrading microbiota signature. medRxiv 2022:2022.06.16.22276474.

6. Yin Y AS, Ecker J, Laschinger M, Liebisch G,  Höring M, Basic M, Bleich A, Zhang XJ, Stupakov P, Gärtner Y, Lohöfer F, Mogler C, Friess H, Hartmann D, Holzmann B, Hüser N, Janssen KP. The gut microbiota promotes liver regeneration through hepatic membrane phospholipid synthesis. Journal of Hepatology

7. Kreft L, Hils M, Swiontek K, Flatley A, Janowski R, Mirzaei MK, Dittmar M, Chakrapani N, Desai MS, Eyerich S, Deng L, Niessing D, Fischer K, Feederle R, Blank S, Schmidt-Weber CB, Hilger C, Biedermann T, Ohnmacht C. A novel monoclonal IgG1 antibody specific for Galactose-alpha-1,3-galactose questions alpha-Gal epitope expression by bacteria. Frontiers in Immunology.

8. Chang Y, Bach L, Hasiuk M, Tsui C, Utzschneider DT, Gutiérrez-Melo N, Raj T, Heink S, Elmzzahi T, Cheng J, Zeiträg J, Jost PJ, Alterauge D, Dahlström F, Becker JC, van Uelft M, Becker M, Reschke S, Krebs S, Blum H, Ohnmacht C, Hasenauer J, Meissner F, Beyer M, Korn T, Heissmeyer V, Kallies A, Jeker L, Baumjohann D. TGFb induces murine CXCR5 and Bcl6 and differentially specifies Tfh versus Th17 cell fates through c-Maf. Science Immunology

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